Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31381
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 33 0.29
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 32 0.39
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 32 0.39
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 32 0.51
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 31 1.2
03_05_0994 + 29541109-29542527 29 3.6
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 28 6.3
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 28 6.3
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 6.3
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 8.4
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 32.7 bits (71), Expect = 0.29
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = -3
Query: 704 ERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRV---DTRS 534
+ +KR D+KELK ++KQ + K + +H + Q K + V + +S
Sbjct: 975 KEEKRLLQDIKELKAQKKQLSSNMGSKAEMGEAFEQKEHIHEQQKILKKDSDVLLTNLKS 1034
Query: 533 YDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWF--GERPGKK 384
+DK + + + +D L K+ +E RQKA +WF + PG+K
Sbjct: 1035 LEDKTRFIKKAFDD-ERDALRKLTEEHQAAHEVRQKA-YDEWFELKKEPGRK 1084
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -3
Query: 707 EERQKRQDYDLK--ELKERQKQQLRHKALKKGLDPEALTGK 591
EER K+++ + K E K R+K++ + K LKK + + LTGK
Sbjct: 455 EERLKKEEEERKAEEAKRRKKEREKEKLLKKKQEGKLLTGK 495
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 32.3 bits (70), Expect = 0.39
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -3
Query: 707 EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEAL-TGKHPPKIQVASKYERRVDTRSY 531
++ QK Q KELK+++K++ R + +K EAL K K + K ++R
Sbjct: 332 KDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEA 391
Query: 530 DDKKKLFEGDLEKLNKDFLEKVWQERAEQ 444
++K E + + K +K QE AE+
Sbjct: 392 QKEQKRREKEEAETRKQ--QKKQQEEAEK 418
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = -3
Query: 707 EERQKRQDYD--LKELKERQKQQLRHKALKKGLDPEALTGK 591
EER +R++ + ++E+K +QK++ + K +KK D + LTGK
Sbjct: 203 EERLQREEDERMVEEMKMQQKERDKGKTMKKRQDGKTLTGK 243
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 693 ETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSV 565
E GL ++ + + + T +S + SRP SAH P S V
Sbjct: 300 EKGLDWRKMETEIEQKTSRPTSSQSSRPNSAHSSRPGSPGSQV 342
>03_05_0994 + 29541109-29542527
Length = 472
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -3
Query: 707 EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPK---IQVASKYERRVDTR 537
EE++K +D + +E +E + + + + PEA PP+ + A++ + VDT
Sbjct: 223 EEQEKGKDEEQEEKEEEEVPVVTRRGRSRKAAPEAAVAPPPPRARSTRAAARRGKAVDT- 281
Query: 536 SYDDKKKLFEG 504
S D+++ G
Sbjct: 282 SLDERESEMAG 292
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 702 EAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVRE 553
EAK KRA+ A A++ ++ R R A R+A Q +V + E
Sbjct: 664 EAKAAEDARKRAEAAAAAEAAAEAKRQREREREAARKALQQMEKTVDINE 713
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = -2
Query: 681 RLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRRQKETVRG* 502
R K +TKA+ EA Q+G R + R+ + + LR+++E R
Sbjct: 417 RSKTEAARTKASQEAFREQQGLRQEALQRKKAEKKKLMEEAEAKLSAEALRKKEEKERA- 475
Query: 501 PRETEQGLPREGVAR 457
R+ ++ +P+ + R
Sbjct: 476 -RQMKKSMPKVKMLR 489
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 500 GHPRTVSFCRRRIVCRHASRTWTLLEFWAG 589
GH R VS R R + H +R+W L+ +G
Sbjct: 103 GHERVVSVFRDRALELHTTRSWDFLDVQSG 132
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 653 KQQLRHKALKKGLDPEALTGKHPP 582
K+ RH KK +D +T KHPP
Sbjct: 882 KKSARHSRNKKKVDEAPVTSKHPP 905
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,646,589
Number of Sequences: 37544
Number of extensions: 188050
Number of successful extensions: 826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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