Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31381
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45976.1 68414.m05206 expressed protein                             30   1.3  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    29   3.0  
At3g43800.1 68416.m04681 glutathione S-transferase, putative glu...    29   3.0  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   3.0  
At5g48040.1 68418.m05936 hypothetical protein                          28   5.3  
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (...    28   5.3  
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    28   5.3  
At1g62040.1 68414.m06997 autophagy 8c (APG8c) identical to autop...    28   5.3  
At3g28770.1 68416.m03591 expressed protein                             28   7.0  
At3g53350.3 68416.m05888 myosin heavy chain-related low similari...    27   9.2  
At3g53350.2 68416.m05887 myosin heavy chain-related low similari...    27   9.2  
At3g53350.1 68416.m05886 myosin heavy chain-related low similari...    27   9.2  
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    27   9.2  

>At1g45976.1 68414.m05206 expressed protein
          Length = 325

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = -3

Query: 695 KRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKK 516
           +RQD D+    + Q  QLRH  L K    +  T     +  V    E+  +    + K K
Sbjct: 144 QRQDADIDRFLKIQGDQLRHAILDKIKRGQQKTVSLMEEKVVQKLREKDEELERINRKNK 203

Query: 515 LFEGDLEKLNKDFLEKVWQERAE 447
             E  +E+L  +   + WQ+RA+
Sbjct: 204 ELEVRMEQLTME--AEAWQQRAK 224


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -3

Query: 707 EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKI-QVASKYERRVDTRSY 531
           +ER+K +  D  + K+++K++ RHK  +   D E    K   ++ + ASK     D  ++
Sbjct: 84  KEREKDKSRDRVKEKDKEKERNRHKDRENERDNEKEKDKDRARVKERASKKSHEDDDETH 143

Query: 530 DDKKKLFEGDLEKLNK 483
              ++    D   LN+
Sbjct: 144 KAAERYEHSDNRGLNE 159


>At3g43800.1 68416.m04681 glutathione S-transferase, putative
           glutathione transferase, papaya, PIR:T09781
          Length = 227

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 121 KLMDWLQNCRTRPA 162
           KLMDW++ C TRPA
Sbjct: 186 KLMDWIRKCLTRPA 199


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
 Frame = -3

Query: 707 EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP-KIQVASKYERRVDTRSY 531
           EER+K ++   K  +ERQ+++      K+  + E    +    K +   K E  +  R  
Sbjct: 521 EEREKEEEMAKKREEERQRKEREEVERKRREEQERKRREEEARKREEERKREEEMAKRRE 580

Query: 530 DDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKKKGELES 366
            ++++    + E++ +   E+  ++R E+   R++    K   E   +KK E E+
Sbjct: 581 QERQR---KEREEVERKIREEQERKREEEMAKRREQERQKKEREEMERKKREEEA 632


>At5g48040.1 68418.m05936 hypothetical protein
          Length = 422

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 629 LKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLF----EGDLEKLNKDFLEKVW 462
           L++  D   L  KHP  ++V  K+   ++    D  + L+    E DLEK N      VW
Sbjct: 335 LREAYDRRHLIEKHP-LVEVREKFANMMNEGFLDRSRGLYQKSVEADLEKNNIKTSYPVW 393

Query: 461 QERAEQ 444
            +  E+
Sbjct: 394 SDEEEE 399


>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
           (IRX5) nearly identical to cellulose synthase
           [Arabidopsis thaliana] GI:27462651; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 566 SKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGK 387
           SK + R + R++     +   D E     + +  W+ER +++  RQ+ R     GE+  +
Sbjct: 123 SKQQWRPNGRAFSSTGSVLGKDFEAERDGYTDAEWKERVDKWKARQEKRGLVTKGEQTNE 182

Query: 386 KKGELE 369
            K + E
Sbjct: 183 DKEDDE 188


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -3

Query: 566 SKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQE 456
           S+ ER +    ++D+++  EG++EKL+K  LE+ + E
Sbjct: 429 SEKEREIKKNLFEDQQQQLEGNVEKLSK-ILEEPFDE 464


>At1g62040.1 68414.m06997 autophagy 8c (APG8c) identical to
           autophagy 8c [Arabidopsis thaliana] GI:19912155;
           contains Pfam profile PF02991: Microtubule associated
           protein 1A/1B, light chain 3
          Length = 119

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 647 QLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDL 498
           +L H   ++ ++   +  K+P +I V  +   R D  + D KK L   DL
Sbjct: 7   KLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADL 56


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = -3

Query: 707  EERQKRQDYDLKELKERQKQQLRHKALKKG-LDPEALTGKHPPKIQVASKYERRVDTRSY 531
            ++++K+   D ++ KE++ ++   K LKK   D +  T     K Q  +K E+    +  
Sbjct: 1179 DKKEKKSSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEK---NKPK 1235

Query: 530  DDKK---KLFEGDLEKLNKDFLEKVWQERAE 447
            DDKK   K   G  E +  +  E   Q++++
Sbjct: 1236 DDKKNTTKQSGGKKESMESESKEAENQQKSQ 1266


>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 394

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 674 KELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSY-DDKKKLFEGDL 498
           +ELK+ +++  R +ALK+    EA   KH      AS+  R  + R    ++ K ++ +L
Sbjct: 83  EELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSEL 142

Query: 497 EKLNK 483
           E + +
Sbjct: 143 EAMQR 147


>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 394

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 674 KELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSY-DDKKKLFEGDL 498
           +ELK+ +++  R +ALK+    EA   KH      AS+  R  + R    ++ K ++ +L
Sbjct: 83  EELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSEL 142

Query: 497 EKLNK 483
           E + +
Sbjct: 143 EAMQR 147


>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
           to filamin-interacting protein S-FILIP [Rattus
           norvegicus] GI:21392397, nonmuscle heavy chain myosin
           II-A [Mus musculus] GI:17978023
          Length = 396

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 674 KELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSY-DDKKKLFEGDL 498
           +ELK+ +++  R +ALK+    EA   KH      AS+  R  + R    ++ K ++ +L
Sbjct: 85  EELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQERDKTWQSEL 144

Query: 497 EKLNK 483
           E + +
Sbjct: 145 EAMQR 149


>At1g76780.1 68414.m08935 expressed protein ; expression supported
           by MPSS
          Length = 1871

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -3

Query: 698 QKRQDY--DLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDD 525
           QKR D   ++KEL+E Q  +         L P     +   KIQ   + E       Y++
Sbjct: 464 QKRHDKQENIKELREGQASEAEKNIKNDILKPVQKRSEGKHKIQKTFQEETNKQPEGYNE 523

Query: 524 KKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPK 411
             K+ E   +K+N+D   KV QE   Q    + AR  K
Sbjct: 524 --KIMETG-KKINEDGTRKV-QEMIRQQELDEPARSEK 557


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,788
Number of Sequences: 28952
Number of extensions: 147174
Number of successful extensions: 657
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)