Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31379
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   2.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   2.8  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    25   3.8  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   5.0  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   6.6  

>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 381 YGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 253
           YG     +T+S  SS+V  P  P    P  +    + N+S+ S
Sbjct: 321 YGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSS 363


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 406 LMILPQVPLRKPCYDFYFL*MIKFGQLP 323
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +3

Query: 33  RSVMPLDVLGRTRATLKES-ACSPWPRGPGNPL------KLLRAGDWGLQLSPINEEFLV 191
           +++ P DV+ R++  LKES +   +    G PL        +RA D G    P +     
Sbjct: 112 QNLFPTDVVQRSKMLLKESGSLGAYSASQGIPLVRRHVADFIRARD-GFDCEPSDIYLTS 170

Query: 192 SASHKLALITSL 227
            ASH   LI +L
Sbjct: 171 GASHAARLIMTL 182


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 192 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 91
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 118 PGPLGQGEHADSFSVARVRPRTSKGI 41
           PG LG    + +  +  V+PRT +G+
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGL 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,453
Number of Sequences: 5004
Number of extensions: 36240
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)