Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31378
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.59 
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    24   7.2  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    24   7.2  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 37   VLLLKIFLGHLPDELSFSSAQDVIGNL 117
            +LL   F   LP E++FSSA++VIG L
Sbjct: 4142 ILLTDNFKFILPYEITFSSAKEVIGQL 4168


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 96  PGRHRQFVGIGKTVFMVTIDSCQPERELQKKKQKKSTITVIYRR 227
           PG  R FV     VF   ++       LQ+K  ++ + TV+YRR
Sbjct: 15  PGAGRLFVRGDNKVFRF-VNKKSESLFLQRKNPRRLSWTVLYRR 57


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 96  PGRHRQFVGIGKTVFMVTIDSCQPERELQKKKQKKSTITVIYRR 227
           PG  R FV     VF   ++       LQ+K  ++ + TV+YRR
Sbjct: 15  PGAGRLFVRGDNKVFRF-VNKKSESLFLQRKNPRRLSWTVLYRR 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,043
Number of Sequences: 5004
Number of extensions: 18748
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)