Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31378
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 27 4.1
SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24) 27 4.1
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 27 4.1
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031) 27 4.1
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 27 4.1
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37) 27 4.1
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 26 9.5
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 538 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 569
>SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24)
Length = 505
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 124 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 155
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 1490 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 1521
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 447 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 478
>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
Length = 313
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 244 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 275
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 1210 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 1241
>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 315
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 246 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 277
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 473 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 504
>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
Length = 458
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLKIFLGHLPDELSFSSAQDVIGNLSASVKRY 138
L +FL LPD L+ SS+ ++GN + Y
Sbjct: 246 LFNLFLSDLPDTLAKSSSAHILGNTKLNCLLY 277
>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 153 DSCQPERELQKKKQKKSTITVIYRRE 230
D QP E K KQKK+T+T R E
Sbjct: 788 DEAQPREEEGKHKQKKTTMTRREREE 813
>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 129 KTVFMVTIDSCQPERE 176
KTV VT+D CQ E+E
Sbjct: 298 KTVIPVTVDECQEEKE 313
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 290 VVTIDSCQHERELQKKKKKTRGGA 361
+ T++SC H+R LQ ++ K R A
Sbjct: 438 LATVNSCLHKRNLQLQELKARADA 461
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,913,811
Number of Sequences: 59808
Number of extensions: 149149
Number of successful extensions: 394
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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