Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31377
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 31 0.64
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 31 1.1
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7) 30 2.0
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 30 2.0
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 29 4.5
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 28 7.9
SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029) 28 7.9
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 18 PKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLL 197
PK ++ P S+ D WM+ +E FV+K+N Q+ + SS F K+ + + +I L+
Sbjct: 257 PKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLITLEKIPVLI 312
Query: 198 DQ 203
+
Sbjct: 313 HE 314
>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 736
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Frame = +3
Query: 78 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 239
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 463
Query: 240 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVV 362
+ S + G DG P + + + +E P +E + +++
Sbjct: 464 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNALL 507
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 231 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 404
+++T P+ +++P GT ++ + PY P P + P S GYP P
Sbjct: 93 NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152
Query: 405 LPQYF 419
P Y+
Sbjct: 153 QPGYY 157
>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = +3
Query: 78 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 239
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 314
Query: 240 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 356
+ S + G DG P + + + +E P +E + +
Sbjct: 315 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 356
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = +3
Query: 78 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 239
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 549
Query: 240 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 356
+ S + G DG P + + + +E P +E + +
Sbjct: 550 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 591
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 246 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 389
PS ++ P+ Y G+PFQ YP P P F + P + P YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/54 (22%), Positives = 34/54 (62%)
Frame = +1
Query: 361 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 522
+ T + ++++++ +L+ S L + ++ ST+++NYS + +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 315 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKV 449
P+ P + +PF+SV P +PF Q +QP+ F+ V
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPFRADQQTQQPFQSGQQPHQPFRSV 553
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 169 YRWPKSTS-SWTKERFLLTCSTPRTLCLQG*CCLRVH 276
Y WP S + +K +F +C+T QG CLR H
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLRFH 301
>SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)
Length = 266
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 3 QEFLGPKYDENGFPFSLEDNWMNFYELDWFV-QKVNPGQ-SQITRSSTDFAFFKEDSLPM 176
Q+ LG D+NG P +L+D W + E+D V V P Q QI D +E P+
Sbjct: 187 QDVLGT--DKNGNPITLKDLWPSDEEIDAIVAASVKPEQFKQIYIPMFDLGTIEEAESPL 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,385,678
Number of Sequences: 59808
Number of extensions: 384781
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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