Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31376
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51) ide...    28   2.9  
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    27   5.1  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    27   6.8  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   6.8  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   9.0  

>At1g11680.1 68414.m01341 obtusifoliol 14-demethylase (CYP51)
           identical to obtusifoliol 14-demethylase (GI:14624983)
           [Arabidopsis thaliana]
          Length = 488

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 61  ALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNSGAYN 231
           ++ A  GK        + +T   F  +      DP  YDP R + GR     +GA++
Sbjct: 366 SVTARDGKTYDIPKGHIVATSPAFANRLPHIFKDPDTYDPERFSPGREEDKAAGAFS 422


>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 34  LAICLSLTVALAAETGKYTPFQYNRVYSTVSPF 132
           +A  LS  V L+AET K +P  + R   T  PF
Sbjct: 1   MAQLLSFRVYLSAETQKASPGSFKRTQKTRKPF 33


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  ICLSLTVALAAETGKYTPFQYNRVYSTVSP 129
           +CL+ TVAL +    Y  + +N  Y T +P
Sbjct: 11  VCLASTVALVSAGDPYFYYTWNVTYGTAAP 40


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -3

Query: 468 HLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 322
           H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 HSRASHTHIRCQQGGHTHIRCQQGGPTQR 482
           ++R S+  I CQQ GH    C    P  R
Sbjct: 760 NTRQSNVCIHCQQRGHASTNCPSRVPASR 788


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,470,892
Number of Sequences: 28952
Number of extensions: 164679
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)