Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31375
(428 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 32 0.033
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 32 0.033
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.043
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 30 0.13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.13
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 29 0.40
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 0.71
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 1.2
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.2
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 1.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.2
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 1.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 2.2
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 2.2
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 26 2.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.8
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 3.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 3.8
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 5.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 5.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.6
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 6.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.6
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.6
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 8.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 8.7
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 24 8.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 8.7
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 24 8.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 8.7
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 8.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 24 8.7
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 32.3 bits (70), Expect = 0.033
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
ATS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1608 ATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 31.1 bits (67), Expect = 0.076
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1588 TSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 31.1 bits (67), Expect = 0.076
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1602 TSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1630 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1644 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1651 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744
Score = 30.7 bits (66), Expect = 0.10
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1693 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 29.5 bits (63), Expect = 0.23
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
+TS + + ++P S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Score = 27.5 bits (58), Expect = 0.93
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++P S TS + S PTS +PS SPTS + + T+P
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639
Score = 27.5 bits (58), Expect = 0.93
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
TS S + + ++ S TS +P S PTS +PS SPTS + + T+P
Sbjct: 1595 TSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 25.8 bits (54), Expect = 2.9
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 13 SSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
S S T P+ ++P S TS +P S TS +PS SPTS + + T+P
Sbjct: 1577 SYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 73 TSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPREAICPP 207
TS P S PTS +PS SPTS + + T+P + P
Sbjct: 1567 TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSP 1611
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 32.3 bits (70), Expect = 0.033
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTV-TN 183
+T S T+ T P ++T PP+ T+T+P T + +T+ T+ T N
Sbjct: 57 STHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVN 116
Query: 184 PREAICPPLT 213
+ PP T
Sbjct: 117 STTTVVPPTT 126
Score = 26.2 bits (55), Expect = 2.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKL--RVPTSTLPLTDNPSTSPTSLTRTVTN 183
T++S + +TE T V S T PP T+T+P T + +T+ T T N
Sbjct: 45 TTTSFSSASTE-TSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLN 103
Query: 184 PREAICPPLT 213
PP T
Sbjct: 104 TTTTTAPPTT 113
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.9 bits (69), Expect = 0.043
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQ--NTPPSKLRVPTST----LPLTDNPSTSPTSLT 168
++++STT +T TP V S T+T +TP + + T+T PLT STS TS +
Sbjct: 328 SSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSAS 387
Query: 169 RT 174
T
Sbjct: 388 ST 389
Score = 29.1 bits (62), Expect = 0.31
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTST----LPLTDNPSTSPTSLTRT 174
ATS+S T + ++ +PS T + +TP S T+T PLT ST+ TS + T
Sbjct: 264 ATSASATSSSAQYNTSSLLPSSTPS-STPLSSANSTTATSASSTPLTSVNSTTTTSASST 322
Score = 28.7 bits (61), Expect = 0.40
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKVPSRTSTQ--NTPPSKLRVPTST----LPLTDNPSTSPTSLTRT 174
+STT + TP V S T+T +TP + + T+T PLT STS TS + T
Sbjct: 445 NSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASST 503
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKV--PSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRT 174
+STT + TP V S TS +TP + TST + PS + +S+ T
Sbjct: 363 NSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPT 417
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKV--PSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRT 174
+STT + TP V S TS +TP + TST + PS + +S+ T
Sbjct: 477 NSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPT 531
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 30.3 bits (65), Expect = 0.13
Identities = 23/73 (31%), Positives = 28/73 (38%)
Frame = +1
Query: 4 KATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTN 183
K TSSS + +T + V T +TPP P T N SP S +TN
Sbjct: 224 KKTSSSVPKQSTGENTKKAVKLETPLTSTPPIPPLSEPKHSPATVNEHISPPS---ALTN 280
Query: 184 PREAICPPLTQFP 222
P P T P
Sbjct: 281 PSTEELKPSTSLP 293
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.13
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPR 189
T +STT P T P P+ TS+ +TPP ++ + PSTS + T T P
Sbjct: 294 TGNSTT-PVTPTVP----PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPT 348
Query: 190 EAICPPLT 213
P+T
Sbjct: 349 GNSTTPVT 356
Score = 29.9 bits (64), Expect = 0.18
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 1 LKATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVT 180
L + T P + + + +P TST +T + +PT++ T + S PT + +++
Sbjct: 130 LSTPITPTVPPTSTSSTSIPIPP-TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLS 188
Query: 181 NPREAICPP 207
P PP
Sbjct: 189 TPITPTVPP 197
Score = 28.7 bits (61), Expect = 0.40
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 LKATSSSTTRPATEFTPRL--KVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRT 174
++ TS+S T + TP + S +S T S +P+++ T + S PT + +
Sbjct: 70 VEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSS 129
Query: 175 VTNPREAICPP 207
++ P PP
Sbjct: 130 LSTPITPTVPP 140
Score = 27.9 bits (59), Expect = 0.71
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 1 LKATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVT 180
L + T P + + + +P TST +T + +PT++ T + S PT + T
Sbjct: 243 LSTPITPTVPPTSTSSTSIPIPP-TSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPV 301
Query: 181 NP 186
P
Sbjct: 302 TP 303
Score = 27.9 bits (59), Expect = 0.71
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
+SS +T T +P T TP + PTST + P + TS T T ++P
Sbjct: 328 SSSPLPSTSTSCTTSTSIPP-TGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 385
Score = 27.9 bits (59), Expect = 0.71
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPP---SKLRVPTSTLPL--TDNPSTSPTSL--T 168
T +STT P T P P+ TS+ +TPP S TS+ PL T T+ TS+ T
Sbjct: 348 TGNSTT-PVTPTVP----PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPT 402
Query: 169 RTVTNPREAICPP 207
T P PP
Sbjct: 403 GNSTTPVTPTVPP 415
Score = 27.1 bits (57), Expect = 1.2
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPREA 195
+ST+ T +P +PS +++ T S ST P+T P+ PTS + T T P A
Sbjct: 320 ASTSSTGTSSSP---LPSTSTSCTTSTSIPPTGNSTTPVT--PTVPPTSTSSTSTPPPPA 374
Score = 26.6 bits (56), Expect = 1.6
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPR 189
TS+S+T + P TST + PP+ ST P+T P+ PTS + T T P
Sbjct: 266 TSTSSTDTNSSPLPTTSTSCTTST-SIPPTG----NSTTPVT--PTVPPTSTSSTSTPPP 318
Query: 190 EA 195
A
Sbjct: 319 PA 320
Score = 26.2 bits (55), Expect = 2.2
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPP---SKLRVP-TSTLPLTDNPSTS------PT 159
+S+STT ++ P TST P S L P T T+P T STS T
Sbjct: 96 SSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 155
Query: 160 SLTRTVTNP 186
S T T +NP
Sbjct: 156 SSTDTNSNP 164
Score = 26.2 bits (55), Expect = 2.2
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTST-LPLTDNPSTSPTSLTRTVTNPRE 192
+ST+ +T P + TS+ P + TST +P T N ST+P + T T+
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGN-STTPVTPTVPPTSTSS 366
Query: 193 AICPP 207
PP
Sbjct: 367 TSTPP 371
Score = 25.4 bits (53), Expect = 3.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 13 SSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVP---TSTLPLTDNPSTSPTSLTRTVTN 183
++ST+ P T + L P + T S +P TST N S PT+ T T+
Sbjct: 173 TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 232
Score = 24.2 bits (50), Expect = 8.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTST-LPLTDNPSTSPTSLTRTVTNPRE 192
+ST+ + P + T++ P + TST +P T N ST+P + T T+
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGN-STTPVTPTVPPTSTSS 312
Query: 193 AICPP 207
PP
Sbjct: 313 TSTPP 317
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.7 bits (61), Expect = 0.40
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
A ++ + ++ PR P ++ +N PP + P LP T P T T+
Sbjct: 414 ANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLP------TLPPIQTTTIQTS 467
Query: 187 REAICPP 207
RE PP
Sbjct: 468 REVAPPP 474
Score = 27.1 bits (57), Expect = 1.2
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKV----PSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTV 177
T SS + P +KV PS N PS P+ P N STS S
Sbjct: 342 TGSSAGKTNPPVNPTIKVTAAIPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPAS 401
Query: 178 TNPREAICPPLT 213
+P + P T
Sbjct: 402 ASPLASTLKPST 413
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 0.71
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 112 PTSTLPLTDNPSTSPTSLTRTVTNPREAICPPL 210
PT TD S PT+L TN E PP+
Sbjct: 529 PTKPFSATDISSVQPTNLPNGSTNGTETFIPPV 561
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 139 NPSTSPTSLTRTVTNPREAICPPL--TQFPRRS 231
NP ++P S R+ +NPR+ PP T +P RS
Sbjct: 23 NPVSTPNSHFRSASNPRKRREPPTIDTGYPDRS 55
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 4 KATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTS 162
K+ S++ PAT T K +T + P++T + PST PTS
Sbjct: 515 KSKSAAYHYPATTETVSSKAARSATTPAYVGGATKTPSTTKAVESTPSTLPTS 567
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.1 bits (57), Expect = 1.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKL---RVPTSTLPLT-DNPSTSPTSLTRTV 177
T+S++ PAT + TST PP+ + VPT+T T P + T+LT T
Sbjct: 165 TTSTSCNPATVLI--VTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGTP 222
Query: 178 TN 183
+N
Sbjct: 223 SN 224
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 37 TEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDN--PSTSPTSLTRTVTN 183
T T + + S +TP S L P L ++DN S+S T+ T++N
Sbjct: 416 TAITSIYQFANLLSPADTPDSYLAAPKERLSISDNMSSSSSQTATVNTISN 466
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 64 PSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTN 183
P+ ++ T S VPT T+ + S++P SLT + T+
Sbjct: 248 PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS 287
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 1.6
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Frame = +1
Query: 64 PSRTSTQNTPPSK-LRVPTSTLPLTDNPSTSPTSLTRT----VTNPREAICPPLTQFPRR 228
PS +S + PS + +PT +L + NPS +P V N +I FP
Sbjct: 269 PSLSSQPVSVPSNTINIPTDSLSIVSNPSQTPAKFDSNRISQVPNSDYSIYSNFNNFPIA 328
Query: 229 SXXXXXXXXXXXXXXXXWKEKSSPTC*DKSRQQHTATS-TNETD 357
+ + S PT S +TS TN D
Sbjct: 329 NHAPSFPQSSVKKLDSSFSPTSLPTFTTNSASSGLSTSYTNNND 372
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 70 RTSTQNTPPSKLRVPTSTLPLTDNPS--TSPTSLTRTVTNPREAICPPLTQFP 222
R + + PP P +++PL N ++ S + T +NP + PP++ P
Sbjct: 113 RLALKRPPPDSHDSPNNSIPLMANSCLLSADNSSSSTTSNPN--VAPPISTLP 163
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 46 TPRLKVPSRTSTQNTPPSKLRVPTST 123
TP+LK+PS+ T N ++ V TS+
Sbjct: 1169 TPKLKIPSQQVTVNNTLQQIHVHTSS 1194
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 37 TEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSL-TRTVTNPREA 195
T TP P+ S + PP R+P LP P+S T+ REA
Sbjct: 33 TVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREA 86
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 112 PTSTLPLTDNPSTSPTSLTRTVTNPREAICPPLTQ 216
PT T P PSTS +S T T T P + P T+
Sbjct: 168 PTQTSP--GKPSTSESSQTDTSTRPANSQTPTTTR 200
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 3.8
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTST--------LPLTDNPSTSPTSLTR 171
S + A++ SR + + S L PTST P DNPS+S S+ R
Sbjct: 466 SDSESMASDLAGESSYGSRAALSSRSQSNLLSPTSTGASNQPNYSPFADNPSSSNVSIPR 525
Query: 172 TVTNPR 189
+ + R
Sbjct: 526 SSSEAR 531
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 3.8
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 13 SSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPRE 192
S+ TT + + TP K S +T L T DN STS S + + P++
Sbjct: 836 SAVTTSLSPDVTPAPKASSTVATDKVNIEVLPESQKTPTAVDNTSTSRGSTSVKTSKPKK 895
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 3.8
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 4 KATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRT 174
K+ SS+ P + R+K+P+ +++ P L+VP T +P +PTS ++T
Sbjct: 198 KSLSSTIKSPPS----RVKLPTSILSKSPP---LKVPNKNRSSTFSPLRTPTSSSKT 247
Score = 25.4 bits (53), Expect = 3.8
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Frame = +2
Query: 209 SPNSRGDRPRSCLHRGPPPQ-----------PLRRGKKSRRQLVRISQDNNIPPLVQTKL 355
SP SR P S L + PP + PLR S + V + PP ++TKL
Sbjct: 206 SPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTKL 265
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 10 TSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTD 138
T++S ++P+ TP+ ++ S N + T++LP+TD
Sbjct: 98 TNTSISKPSQTATPQNTNTTQVSLTNGTTTNSYSNTNSLPITD 140
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 385 KSNSLFPTLCQFRLY*WRYVVVLTYPNKL 299
K++ +FP+ QFR+ ++ V+ L P KL
Sbjct: 632 KNHDMFPSAFQFRMGGYKGVLSLAPPTKL 660
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 5.0
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 16 SSTTRPATEFTPRLKVPSRT-STQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTN 183
SS+T E P L SRT S+ N+P S +P+ST L +S S+ + N
Sbjct: 403 SSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTLSVNKKQFN 459
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 6.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNP 186
A SS+ PA VP+ P + P+S P T ST P S + P
Sbjct: 1471 APSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVP 1530
Query: 187 REAICPPLTQFP 222
A PP Q P
Sbjct: 1531 SPA--PPAPQHP 1540
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 6.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 25 TRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPREAICP 204
T+P + + +R T T S R P+ + + S S +R +T+PR + P
Sbjct: 466 TQPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMTSPRTPL-P 524
Query: 205 PL--TQFPRRS 231
+ TQ P RS
Sbjct: 525 RVKNTQNPSRS 535
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 28 RPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPT 159
RPAT P +P + N P S+ P S P +PT
Sbjct: 634 RPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQHGTPLATPT 677
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 43 FTPRLKVPSRTS-TQNTPPSKLRVPTSTLPLTDNPSTSPTSLTR 171
F P K + + T +TPP+ + P S+LP P S TS R
Sbjct: 34 FVPTSKQAALSDITPDTPPA-FKTPYSSLPYNLVPQNSSTSKKR 76
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 73 TSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTR 171
+S+ N+ PS T +PL DNP + + + +
Sbjct: 2 SSSSNSDPSSSPDNTDFIPLKDNPKDTSSYINK 34
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +1
Query: 7 ATSSSTTRPATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTN 183
++SSS++ ++ + S +ST ++ S PTST + S+S +S + T+++
Sbjct: 265 SSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSS 323
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 130 LTDNPSTSPTSLTRTVTNPRE 192
LT+ P PT LT+TV N RE
Sbjct: 269 LTNGPG-DPTHLTKTVNNLRE 288
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 31 PATEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTN 183
PA+ P S +ST N + V T+ S+SP S R N
Sbjct: 49 PASNVRPARPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNTVN 99
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 37 TEFTPRLKVPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTS 162
T F+ + S+ T +TPPS++ S +PST S
Sbjct: 314 TLFSDDSRFHSKIHTHSTPPSQMYSAASHFRYRSDPSTRHVS 355
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 206 PSPNSRGDRPRSCLH--RGPPPQPLRRGKKSRRQLVRISQDNNIPP 337
P P+SR + R PPP P R + + + S ++++PP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPP 338
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 275 RRGKKSRRQLVRISQDNNI 331
RR + R+QL+ I QDN++
Sbjct: 66 RRRDQKRKQLISIKQDNDL 84
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 61 VPSRTSTQNTPPSKLRVPTSTLPLTDNPSTSPTSLTRTVTNPREAICPPLTQFP 222
VP + P ++ PTS ++N S P S + NP C P+ + P
Sbjct: 103 VPLPHDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQPVLRPP 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,872
Number of Sequences: 5004
Number of extensions: 31014
Number of successful extensions: 227
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -