Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31373
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.92 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 133 FYSGDSYIVLNTTGDKDRLTWDIHF 207
           F  GD+ I +N    K+++ WD  F
Sbjct: 666 FQPGDTIICINIKRQKEKIEWDPGF 690


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 41  AWCTSGILGRVHS 3
           A CTSGI+GR H+
Sbjct: 143 AICTSGIVGRTHT 155


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = +1

Query: 448 GKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERM 582
           G  N+ + + +   + L + DC +  ++ ++FV  G+ A  + ++
Sbjct: 61  GSTNIGINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKL 105


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 422 VPSLIVTWLKPEACP 378
           V S I  W+KPEA P
Sbjct: 229 VMSWIAFWIKPEAIP 243


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
 Frame = +2

Query: 227 ARTKPARRPSSR*TWTTNNSRDQRY-STERSNITSPRSS*NISHQPSAI*KADTPQASAT 403
           +RTK  R    R  W     R+Q Y   +R  I         SH      K    + S T
Sbjct: 29  SRTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHE---KKLVLERSKT 85

Query: 404 *RSMREQRNDSSRSRVKETSALS 472
                E R+ S+ S   +T  LS
Sbjct: 86  KSKSPESRDRSNTSNTSKTFILS 108


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 268 LDDEQFQGSAVQHREVQYYESKEFL 342
           +D EQF     +   VQY  S++ L
Sbjct: 281 VDTEQFSNPQYEENNVQYEGSQDIL 305


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 422 VPSLIVTWLKPEACP 378
           + S +  W+KPEA P
Sbjct: 260 IMSWVSFWIKPEAAP 274


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 247  AAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFS 399
            +A L V  + ++  G  + + E +   S E L  +SP +  L+ G   GF+
Sbjct: 994  SAELIVRTEPQRPAGPPI-NLEARALSSSEILITWSPPLPELRHGDIQGFN 1043


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 247  AAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFS 399
            +A L V  + ++  G  + + E +   S E L  +SP +  L+ G   GF+
Sbjct: 990  SAELIVRTEPQRPAGPPI-NLEARALSSSEILITWSPPLPELRHGDIQGFN 1039


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,427
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)