Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31372
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FFJ5 Cluster: CLN3 protein; n=1; Trichomonas vaginali...    35   1.8  
UniRef50_Q754L4 Cluster: AFR058Cp; n=1; Eremothecium gossypii|Re...    33   5.4  

>UniRef50_A2FFJ5 Cluster: CLN3 protein; n=1; Trichomonas vaginalis
           G3|Rep: CLN3 protein - Trichomonas vaginalis G3
          Length = 389

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 239 FLFGFLSNCPENTYLCYIARYTKDNKI*VFSNNNNVLGITGS 114
           FLFGF S+  E+  LCYI    K N +  +S+   + GI G+
Sbjct: 111 FLFGFSSSFGESVLLCYITIRKKQNLLTSWSSGTGMAGILGA 152


>UniRef50_Q754L4 Cluster: AFR058Cp; n=1; Eremothecium gossypii|Rep:
            AFR058Cp - Ashbya gossypii (Yeast) (Eremothecium
            gossypii)
          Length = 1593

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = -1

Query: 554  YFYRNICMPPLPSRTADKI*SSRKQKLHHLYTILNQGNT*IRVILEGSNFMNIR-SMKIT 378
            +FY  I      +R+ +   +S+  +LHHLY++L      +R++L  +N+M+IR +++  
Sbjct: 1076 FFYGMIIRTFEQARSEEAFDNSKLSRLHHLYSVLLYD---LRLLLSETNYMSIRNTIEFL 1132

Query: 377  NKYIP 363
            N+  P
Sbjct: 1133 NQISP 1137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,552,277
Number of Sequences: 1657284
Number of extensions: 14821330
Number of successful extensions: 32359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32347
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)