Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31372
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)                 29   3.8  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)                   29   5.0  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               29   5.0  

>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
          Length = 595

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 1   QESYLSFSQTFIGHLCAIFTASVYLSYIGNIFDSSSLAEPVIPN 132
           + S L+FS  ++G L AI   +VY S I ++ + +S A    PN
Sbjct: 460 RSSCLAFSYQYLGGLNAIELITVYRSLIRSVIEYASAAFANFPN 503


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 376 TNIFRAVDGLVSXXXXXXXXXXXLDNFHELQE 281
           +NIF ++DGLV             DN HE+QE
Sbjct: 794 SNIFFSLDGLVKVGDFGLVTATKQDNIHEIQE 825


>SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)
          Length = 445

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 188 CNTNKYFLDSWIGNQTKNEHFSSF 259
           CNT+++   SW GN+  + H S F
Sbjct: 417 CNTSRHSTHSWWGNRRHSGHISKF 440


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -1

Query: 560 NIYF--YRNICMPPLPSRTADKI*SSRKQKLHHLYTILNQGNT*IRVILEGSNFMNIRSM 387
           NI F  Y N  +PPLP  +   + S + QK+     + +     +R + +G N +N+   
Sbjct: 523 NIQFDDYSNKSLPPLPKESFTGLSSEKDQKV-----VASSQKLCLRTLRQGINVLNLIIR 577

Query: 386 KITNK 372
           K+T +
Sbjct: 578 KVTTR 582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,397,543
Number of Sequences: 59808
Number of extensions: 489535
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)