Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31372
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-...    29   2.3  
At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger) fa...    29   2.3  
At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger) fa...    29   2.3  
At1g38380.1 68414.m04694 hypothetical protein                          29   4.1  
At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein ...    28   7.2  
At4g15890.1 68417.m02415 expressed protein                             27   9.5  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    27   9.5  
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    27   9.5  

>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
           domain-containing protein low similarity to NUB1
           (NEDD8-interacting protein) [Homo sapiens] GI:13383476;
           contains Pfam profile PF00627: UBA/TS-N domain
          Length = 562

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 391 ERMFMKLEPSKITRIHVLPWLRIVYKWCNFCLRDDYILS 507
           E  F+  +P  +  +  LP + I   WC F LRD   LS
Sbjct: 172 EESFLLCDPKILELVDNLPMMEIDIVWCYFLLRDIKCLS 210


>At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 369 IFVSNLHGTDVHEIGAFQNHTYSCITLVKNSVQVV*FLFT*RLYFICGTTR*RWHAYVTV 548
           + V   +G ++ E+  ++ H Y   TL   ++ +V  L+   +  ICG      H +V  
Sbjct: 156 LLVYKFYGEELREMFGYEEHPYGFYTLAVLAIVLVGLLYGFFIAIICGQKINERHYHVLA 215

Query: 549 KVDI 560
           K ++
Sbjct: 216 KQEL 219


>At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 369 IFVSNLHGTDVHEIGAFQNHTYSCITLVKNSVQVV*FLFT*RLYFICGTTR*RWHAYVTV 548
           + V   +G ++ E+  ++ H Y   TL   ++ +V  L+   +  ICG      H +V  
Sbjct: 156 LLVYKFYGEELREMFGYEEHPYGFYTLAVLAIVLVGLLYGFFIAIICGQKINERHYHVLA 215

Query: 549 KVDI 560
           K ++
Sbjct: 216 KQEL 219


>At1g38380.1 68414.m04694 hypothetical protein
          Length = 378

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +1

Query: 319 DTDEAK*NLLNHLPLGIYLLVIFMERMFMKLEPSKITRIHVLPWLRIVYKWCNFCLRDDY 498
           D+ +A  + + HL L  YL+ +    +F K+EP K+    +L    +V+ +    LR + 
Sbjct: 165 DSKDAVHSEIRHLVLR-YLVRLISSTLFCKMEPGKMRLSELLVLYHVVHDFFPDSLRFEE 223

Query: 499 ILSAVRLGSGGMHML 543
           +   V +G+   H L
Sbjct: 224 VDRDVNVGAVFAHHL 238


>At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein
           similar to Golgi-specific DHHC zinc figer protein [Mus
           musculus] GI:21728103; contains Pfam profile PF01529:
           DHHC zinc finger domain
          Length = 286

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 545 GKSRYCGKCTHF-PVNVHIC 601
           G  RYC KC+HF P   H C
Sbjct: 94  GDLRYCQKCSHFKPPRAHHC 113


>At4g15890.1 68417.m02415 expressed protein
          Length = 1314

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 428 VILEGSNFMNIRSMKITNKYIPSGRWFSKFYLASSVSIYL 309
           +I E  +    RSM I     P+G WF    L S VS+YL
Sbjct: 608 IIKESESLWLSRSMPINRWTAPAGAWF----LLSEVSVYL 643


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to Spastin
            (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
            (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
            mitochondrial sorting protein 1 (MSP1) protein
            (TAT-binding homolog 4) (Swiss-Prot:P28737)
            [Saccharomyces cerevisiae]
          Length = 1265

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 416  GSNFMNIRSMKITNKYIPSGRWFSK--FYLASSVS 318
            G+NF+NI    IT+K+   G  + K  F LAS ++
Sbjct: 1023 GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA 1057


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to
            mitochondrial sorting protein 1 (MSP1) (TAT-binding
            homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
          Length = 1252

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 416  GSNFMNIRSMKITNKYIPSGRWFSK--FYLASSVS 318
            G+NF+NI    IT+K+   G  + K  F LAS ++
Sbjct: 1010 GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA 1044


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,373
Number of Sequences: 28952
Number of extensions: 328194
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)