Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31368
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    27   0.11 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   5.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 427 CATNKQNSSACPTNSTRPANRKTPSPAKTRKWVMTCMMLARTSP 558
           C+T  +NS   P    + AN K P   +    + T     RTSP
Sbjct: 434 CSTPTENSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRTSP 477


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 540 HHASHHPFSCFRGRGRL 490
           HH + H  +CF  RG L
Sbjct: 367 HHLARHAVACFLTRGDL 383


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 23 FGIRSRPTGRGVRSSS---GPRTSA 88
          FG R R TGRG++ S    GP++ +
Sbjct: 8  FGKRGRSTGRGLKYSGQQHGPQSDS 32


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 537 HASHHPFSCFRGRGRLSVR 481
           H +  PF C + RGR   R
Sbjct: 241 HTNEKPFECDKCRGRFRRR 259


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 412 KPSATCATNKQNSSAC 459
           K +  C  NK+N +AC
Sbjct: 43  KNNGECVINKKNRTAC 58


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 431 QQTNRTPARVPR-TRQDPRTE-RRPRP 505
           ++TN  P   PR T    R E +RPRP
Sbjct: 308 EKTNIAPRERPRATDHQRRNEPKRPRP 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,112
Number of Sequences: 336
Number of extensions: 1869
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)