Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31368
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.057
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.057
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 222  SRFAPPVPGCGWSTCDGFPRFXXXXXXXXXQTW 124
            +R  PPVPG  ++TCD   R           TW
Sbjct: 1650 NRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTW 1682


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 345 EQLERVNIEIKSRLEETVQL 404
           + L+R NI++ +R E+T+Q+
Sbjct: 332 QSLDRQNIDVVARNEDTLQM 351


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 540 HHASHHPFSCFRGRGRL 490
           HH + H  +CF  RG L
Sbjct: 371 HHLARHAVACFLTRGDL 387


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 478 PANRKTPSPAKTRK 519
           P+NRK P+PA  +K
Sbjct: 387 PSNRKLPAPANWKK 400


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 509 FAGEGVFLFAGLVEF 465
           F G  +FLFA +VEF
Sbjct: 298 FLGCTIFLFAAMVEF 312


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +2

Query: 176 SQVLHPHPGTGGANRDPHRENQQR*KTEVSSAE 274
           +++  PH      ++ P+R  + + +T++ S E
Sbjct: 375 ARIFSPHEENESVDKHPNRRARGQLRTKIESGE 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,532
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)