Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31367
(840 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 110 1e-24
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 5e-16
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 39 0.004
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 37 0.018
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2) 33 0.22
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 4.7
SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 110 bits (265), Expect = 1e-24
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Frame = +1
Query: 46 VETISPGDESTYPKS-GQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEG 222
+E +S ++ T G T+ +HYTG L NG KFDSS DRGK F F +GK VI+GW++G
Sbjct: 29 IEVVSKPEKCTRKTHVGDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQG 88
Query: 223 VAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNII 396
+ M +GE+ KLT P AYG+ G IPP++TL DVEL+ ++ + N + +I
Sbjct: 89 LLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGMI 146
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 82.2 bits (194), Expect = 5e-16
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 7/106 (6%)
Frame = +1
Query: 49 ETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDE 219
ET P D K G VVVHYTG + +G FD++RD K PF+F IG VI+G+++
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163
Query: 220 GVAKMSVGERAKLTCSPDYAYGQQGH---PGVIP-PNSTLIFDVEL 345
GV M VG++ K+ P AYG++G PG + N+TL +++EL
Sbjct: 164 GVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209
>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 37 GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 192
GV +S G + G TVVV Y G NG++FDS+ G PF+F +G+
Sbjct: 873 GVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 85 KSGQTVVVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 210
++G V V YTG L GK FDS+ K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 37.1 bits (82), Expect = 0.018
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 94 QTVVVHYTGTL---TNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 264
Q V H+ L + ++ D SR G+PF+ +GK + W+E + M V E A+ TC
Sbjct: 93 QLAVFHFKTFLMEQSEKQELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152
Query: 265 SPDYAYG 285
G
Sbjct: 153 DKSVVAG 159
>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
Length = 492
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 247 RAKLTCSPDYA----YGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNIIVMSIAL 414
R +CSP A + Q+G ++ PNST +F + L R + QF +I S+ L
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQFAFAT-SKVIETSLHL 332
Query: 415 *NSKSQLITLFFITYSH 465
+ L+ + TY+H
Sbjct: 333 RTHPTTLMLAPYYTYAH 349
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 205 RGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDV 339
R D +S GE CSP+ PG++PP+S + D+
Sbjct: 538 RQGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDL 582
>SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 283 RKHSQESRLIWHAHLQTSLPHPH 215
RK+SQ + +IW+ H Q H H
Sbjct: 109 RKNSQRNNIIWYNHFQQEHKHQH 131
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 139 KFDSSRDRGKPFKFRIG----KSEVIRGWDEGVAKMSVGERAKLT 261
KFD + G PFK R+G E ++ + G++ G+ A+ T
Sbjct: 3054 KFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAEFT 3098
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,472,662
Number of Sequences: 59808
Number of extensions: 465570
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -