Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31366
(523 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 330 4e-91
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 328 1e-90
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 328 1e-90
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 328 1e-90
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 328 1e-90
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 328 1e-90
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 328 1e-90
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 328 1e-90
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 315 1e-86
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 289 8e-79
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 235 2e-62
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 197 5e-51
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 2e-48
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 6e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 6e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 1e-46
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 155 2e-38
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 124 4e-29
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 96 2e-20
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 50 1e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.38
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 1.2
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 4.7
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 4.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 6.2
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 6.2
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 6.2
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 6.2
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 6.2
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 330 bits (811), Expect = 4e-91
Identities = 152/155 (98%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTGIVLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 155
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 328 bits (807), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTGIVLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 155
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 328 bits (806), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 155
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 328 bits (806), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 155
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 328 bits (806), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 155
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 328 bits (806), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 155
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 328 bits (806), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 155
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 328 bits (806), Expect = 1e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
TQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 155
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 315 bits (774), Expect = 1e-86
Identities = 143/153 (93%), Positives = 151/153 (98%)
Frame = +2
Query: 65 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 424
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQ 121
Query: 425 IMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
IMFETFN+PAMYV IQAVLSLYA GRTTGIVLD
Sbjct: 122 IMFETFNTPAMYVNIQAVLSLYASGRTTGIVLD 154
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 289 bits (709), Expect = 8e-79
Identities = 132/137 (96%), Positives = 136/137 (99%)
Frame = +2
Query: 113 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 292
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 293 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 472
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 65 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 124
Query: 473 AVLSLYACGRTTGIVLD 523
AVLSLYA GRTTG+VLD
Sbjct: 125 AVLSLYASGRTTGVVLD 141
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 235 bits (574), Expect = 2e-62
Identities = 107/111 (96%), Positives = 110/111 (99%)
Frame = +2
Query: 191 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPV 370
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 371 LLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
LLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYA GRTTG+VLD
Sbjct: 61 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLD 111
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 197 bits (480), Expect = 5e-51
Identities = 89/157 (56%), Positives = 119/157 (75%), Gaps = 4/157 (2%)
Frame = +2
Query: 65 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 235
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 236 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANRE 412
+S RG+ +++YP+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRE 121
Query: 413 KMTQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
+ +I FETFN PA+Y+ +QAVLSLYA GRTTG+VLD
Sbjct: 122 RSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLD 158
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 2e-48
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKI 316
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 6e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKI 316
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 6e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDMEKI 316
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 1e-46
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIITNWDDM 307
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 155 bits (376), Expect = 2e-38
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 3/150 (2%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 256
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 257 TLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMF 433
+ YP+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 434 ETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
E + ++YVA+QAVL+LYA G TG+V+D
Sbjct: 129 EQYGFNSIYVAVQAVLTLYAQGLLTGVVVD 158
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 124 bits (299), Expect = 4e-29
Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 13/158 (8%)
Frame = +2
Query: 59 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 202
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 203 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 379
D ++GDEA S T+KYPI HGI+ +WD ME+ W + LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 380 EAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 493
E PLN NRE +IMFE+FN P +Y+A+QAVL+L A
Sbjct: 121 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTA 158
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 95.9 bits (228), Expect = 2e-20
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Frame = +2
Query: 68 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA--QS 241
D+V+ LV D GS + GFAG++ P+ PS + Q+ GD + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 242 KR------GILTLKYP---------IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 376
KR G + P ++ G+I +W+ EKI H++ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 377 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
+E+ N +A REK+T+IMFE F PA Y++ VLS +A GRT G+++D
Sbjct: 129 SESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVD 177
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +2
Query: 74 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 253
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 254 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 433
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 434 ETF 442
+ F
Sbjct: 116 DYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 49.6 bits (113), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%)
Frame = +2
Query: 74 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 253
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 254 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 433
++ PIE G + NWD ++IW TF + V + LT+ A + ++I+F
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILF 115
Query: 434 ETF 442
+ F
Sbjct: 116 DYF 118
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 37.9 bits (84), Expect = 0.004
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDA--PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 256
L+++ GS +AG + P++ FP+I R + VG + R I
Sbjct: 181 LILELGSCSIRAGVLTTEPSLPQSFFPAIAVRTDDGKIFVGEDAYRPEIRHNGDFVRPIS 240
Query: 257 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 436
+E I D+ K EL+V P ++ VLL+ P ++ QI E
Sbjct: 241 ATDPSVERYSIDK--DVLKAVIGKVTKELKVEPWKYKVLLSIPQNIPTVLIGELLQICLE 298
Query: 437 TFNSPAMYVAIQAVLSLYACGRTTGIVLD 523
+ + Q L LYA TTG+V+D
Sbjct: 299 DIKFQSAGITRQPSLILYAYDVTTGVVVD 327
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 90 STMAPACARPVSPATTRPAPSSRP 161
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 81 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 188
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 204 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 94
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 113 KAGFAGDDAPRAVFPSIVGRPRHQG 187
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 90 STMAPACARPVSPATTRPAPSSRPSWVALATRA 188
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 254 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 171
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 254 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 171
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 254 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 171
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 254 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 171
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 254 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 171
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 358 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 191
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 358 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 191
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 358 LGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSLALGLV--THVGVFLAHTDH 191
L G Q +V +VP +H+ +D++ L S+A+G V +H GV + H H
Sbjct: 215 LHGRDQSVVSSIVPASVHIQSDSEDSIAPSKLTH---SIAVGGVVDSHNGVNVLHRSH 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,318
Number of Sequences: 27780
Number of extensions: 246093
Number of successful extensions: 1177
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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