Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31365
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 387 e-109
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 233 1e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 214 1e-56
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 136 2e-33
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 81 2e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 76 5e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 8e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 2e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.003
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.23
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.8
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 387 bits (953), Expect = e-109
Identities = 183/204 (89%), Positives = 194/204 (95%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
FYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTT
Sbjct: 90 FYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTT 149
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
GIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIV
Sbjct: 150 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIV 209
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
RDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+
Sbjct: 210 RDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGL 269
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
E+ GIHE YNSIMKCDVDIRKDL
Sbjct: 270 ENAGIHEATYNSIMKCDVDIRKDL 293
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 233 bits (571), Expect = 1e-62
Identities = 106/204 (51%), Positives = 146/204 (71%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
F+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++
Sbjct: 90 FFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSS 149
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E V
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETV 209
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
R++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 210 REMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGS 269
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
E G+ E ++++I DVDIRK L
Sbjct: 270 EQPGLSEFIFDTIQAADVDIRKYL 293
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 214 bits (522), Expect = 1e-56
Identities = 97/201 (48%), Positives = 138/201 (68%)
Frame = +2
Query: 11 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 190
+L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIV
Sbjct: 98 QLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIV 157
Query: 191 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 370
L+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+I
Sbjct: 158 LECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREI 217
Query: 371 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC 550
KEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 551 GIHETVYNSIMKCDVDIRKDL 613
G+H ++ SI+ D+D+R L
Sbjct: 278 GLHIQLFKSILLSDIDLRSTL 298
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 136 bits (330), Expect = 2e-33
Identities = 86/218 (39%), Positives = 118/218 (54%), Gaps = 15/218 (6%)
Frame = +2
Query: 5 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT-- 178
+ LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS +
Sbjct: 114 FKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSK 173
Query: 179 ------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SF 334
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S
Sbjct: 174 VTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSS 233
Query: 335 TTTAEREIVRDIKEKLCYVALDFEQEMA--TAAASTSLEKSYELPDGQ--VITIGNERFR 502
TAER IKE+ CYV D +E + L+ + E G I +G ERF
Sbjct: 234 LKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFL 288
Query: 503 CPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDL 613
PE F P + + E V N + +D+RK L
Sbjct: 289 APEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGL 326
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 80.6 bits (190), Expect = 2e-16
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 20/152 (13%)
Frame = +2
Query: 185 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 364
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 365 DIKEKLCYVALDFEQEMATA--AASTSLEKSYELPD------------------GQVITI 484
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 485 GNERFRCPEALFQPSFLGMESCGIHETVYNSI 580
NERF PE LF PS + + GI E V S+
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 75.8 bits (178), Expect = 5e-15
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Frame = +2
Query: 32 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGD 205
EHP+ +TE NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 206 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 385
SH +P+ G + R+ G + YL+K+ + SF + C
Sbjct: 175 AASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHC 234
Query: 386 YVALDFEQEMATAAASTSLEK 448
+V+ D+ ++A A LE+
Sbjct: 235 HVSSDYTHDIAHALDRDILER 255
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 491 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 613
E+ R PE +F PS +G++ GI E + + + + ++ ++ L
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKL 634
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 8e-14
Identities = 36/106 (33%), Positives = 56/106 (52%)
Frame = +2
Query: 11 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 190
+L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T +
Sbjct: 91 QLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACL 150
Query: 191 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 328
+D G S IY+G+ L +G + D L + L ++ +
Sbjct: 151 VDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 551 GIHETVYNSIMKCDVDIRKDL 613
GI + N I +CDVDIR L
Sbjct: 326 GIPQLFQNCISECDVDIRASL 346
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.9 bits (146), Expect = 4e-11
Identities = 29/108 (26%), Positives = 58/108 (53%)
Frame = +2
Query: 11 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 190
+L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T ++
Sbjct: 94 KLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALI 153
Query: 191 LDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 334
+D G + P+ +G + I + LAG L + ++ F
Sbjct: 154 VDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 57.6 bits (133), Expect = 1e-09
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Frame = +2
Query: 329 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 508
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 509 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDL 613
E LF PSF S G+HE VY SI+ CD ++R L
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.6 bits (123), Expect = 2e-08
Identities = 34/114 (29%), Positives = 53/114 (46%)
Frame = +2
Query: 35 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 214
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 215 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 376
PI +G + A +L L GR +T +L +L E + ++ + DI E
Sbjct: 207 DITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/101 (18%), Positives = 48/101 (47%)
Frame = +2
Query: 32 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 211
++ V+ L + EK+ I+F + + +++ + + +G + V+D G
Sbjct: 243 QYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQK 302
Query: 212 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 334
+ + EG +P++ ++++ G D+T MK+L + +
Sbjct: 303 TSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.23
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 145
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 228 STKVTLCPTPSSVWTW 275
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 44 LLTEAPLNPKANREKMTQIMFETFN 118
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 229 LRRLRSAPRHPPSGLGWSRLDRLPHED 309
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,099
Number of Sequences: 5004
Number of extensions: 38647
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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