Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31365
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 413 e-116
SB_56| Best HMM Match : Actin (HMM E-Value=0) 413 e-116
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 413 e-116
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 412 e-115
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 348 2e-96
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 307 6e-84
SB_54| Best HMM Match : Actin (HMM E-Value=0) 289 9e-79
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 233 8e-62
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 206 1e-53
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 171 3e-43
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 114 5e-26
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 110 8e-25
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 89 3e-18
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 71 7e-13
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 38 0.009
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 38 0.009
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 32 0.32
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 32 0.32
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.98
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.0
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 6.9
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 27 9.1
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 413 bits (1018), Expect = e-116
Identities = 196/204 (96%), Positives = 201/204 (98%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 150
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
GIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
RDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGM
Sbjct: 211 RDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM 270
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
ES GIHET YNSIMKCDVDIRKDL
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDL 294
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 413 bits (1017), Expect = e-116
Identities = 196/204 (96%), Positives = 201/204 (98%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
Sbjct: 90 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 149
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
GIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 150 GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 209
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
RDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGM
Sbjct: 210 RDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM 269
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
ES GIHET YNSIMKCDVDIRKDL
Sbjct: 270 ESAGIHETTYNSIMKCDVDIRKDL 293
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 413 bits (1016), Expect = e-116
Identities = 197/204 (96%), Positives = 201/204 (98%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
Sbjct: 90 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 149
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
GIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 150 GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 209
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
RDIKEKL YVALDFEQEMATAAAS+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGM
Sbjct: 210 RDIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM 269
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
ES GIHET YNSIMKCDVDIRKDL
Sbjct: 270 ESAGIHETTYNSIMKCDVDIRKDL 293
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 412 bits (1015), Expect = e-115
Identities = 195/204 (95%), Positives = 201/204 (98%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 150
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
GIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIV
Sbjct: 151 GIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 210
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
RDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGM
Sbjct: 211 RDIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM 270
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
ES GIHET YNSIMKCDVDIRKDL
Sbjct: 271 ESAGIHETTYNSIMKCDVDIRKDL 294
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 348 bits (856), Expect = 2e-96
Identities = 165/179 (92%), Positives = 173/179 (96%)
Frame = +2
Query: 77 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 256
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 257 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 436
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSS 197
Query: 437 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL 613
SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDL
Sbjct: 198 SLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 256
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 307 bits (753), Expect = 6e-84
Identities = 160/204 (78%), Positives = 166/204 (81%)
Frame = +2
Query: 2 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 181
FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
Sbjct: 91 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT 150
Query: 182 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 361
GIV+DS G + H + I ERGYSFTTTAEREIV
Sbjct: 151 GIVMDS------------GDGVSHTV---------------PIYEERGYSFTTTAEREIV 183
Query: 362 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 541
RDIKEKLCYVALDFEQEM TAA+S+S+EKSYELPDGQVITIGNERFRCPEAL QPSFLGM
Sbjct: 184 RDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGM 243
Query: 542 ESCGIHETVYNSIMKCDVDIRKDL 613
ES GIHET YNSIMKCDVDIRKDL
Sbjct: 244 ESSGIHETTYNSIMKCDVDIRKDL 267
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 289 bits (710), Expect = 9e-79
Identities = 130/203 (64%), Positives = 163/203 (80%)
Frame = +2
Query: 5 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG 184
+++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LYASGRTTG
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTG 2195
Query: 185 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 364
V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +TAE++I+R
Sbjct: 2196 TVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQSTAEQQIIR 2255
Query: 365 DIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 544
D+KE LCY A+D+E+E+ A S E Y LPDGQ I IG+ERFR E LFQPS LG +
Sbjct: 2256 DLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRD 2315
Query: 545 SCGIHETVYNSIMKCDVDIRKDL 613
GIHE+++ SI KCD+D+R +L
Sbjct: 2316 IDGIHESIFKSIKKCDIDLRAEL 2338
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 233 bits (570), Expect = 8e-62
Identities = 104/201 (51%), Positives = 141/201 (70%)
Frame = +2
Query: 8 NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGI 187
+++ + P VLLTE PLNP NREKM ++MFE + +Y+AIQAVL+LYA G TG+
Sbjct: 96 SKMNIDPRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGV 155
Query: 188 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 367
V+DSGDGV+H P+YEG+ALPH RLD+AGRD+T YL+K++ RGY+F TA+ E VR
Sbjct: 156 VIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRM 215
Query: 368 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMES 547
+KEKLCYV + EQE A +T L + Y LPDG+V+ + ERF PEALFQP + +E
Sbjct: 216 MKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEG 275
Query: 548 CGIHETVYNSIMKCDVDIRKD 610
G+ E ++N+I D+D R +
Sbjct: 276 VGVAELLFNTIQAADIDTRSE 296
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 206 bits (503), Expect = 1e-53
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +2
Query: 98 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 277
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 278 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 415
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 171 bits (417), Expect = 3e-43
Identities = 74/116 (63%), Positives = 101/116 (87%)
Frame = +2
Query: 32 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 211
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 212 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 379
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 114 bits (275), Expect = 5e-26
Identities = 51/63 (80%), Positives = 57/63 (90%)
Frame = +2
Query: 425 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 604
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 605 KDL 613
KDL
Sbjct: 65 KDL 67
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 110 bits (265), Expect = 8e-25
Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +2
Query: 143 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE- 319
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 320 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERF 499
RG++FT+++ +IV DIKEK+CY++ D +E+ + L K Y LPDGQ+I+IG E
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECI 886
Query: 500 RCPEALFQPSFL 535
E LF+P L
Sbjct: 887 SSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 88.6 bits (210), Expect = 3e-18
Identities = 39/95 (41%), Positives = 64/95 (67%)
Frame = +2
Query: 35 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 214
HP+L++EA N + REK+T++MFE +N PA ++ +VL+ +A+GR+ G+V+DSG +
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQT 93
Query: 215 HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 319
VP+++GY L AI+R LAG +T ++ E
Sbjct: 94 SAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEE 128
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 70.9 bits (166), Expect = 7e-13
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = +2
Query: 137 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 292
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 293 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 418
++ ++L ER E + IKE+ Y+ D +E A
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 476 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDL 613
+ + ERF PE F P F + + + E V N I C +D+R+ L
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPL 242
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 14 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 190
L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 521 LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 579
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 37.5 bits (83), Expect = 0.009
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Frame = +2
Query: 83 EKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYA 244
+ M +I+FE +N A+ A LS Y S +V+D+G +H VP++ G
Sbjct: 319 DAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKV 378
Query: 245 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 424
+ A+ R + +L E +F ++ +KE CYV+ F ++M A
Sbjct: 379 IKKAVRR-----------QLHVLDE---TF-------VINQVKEDTCYVSSQFYKDMEIA 417
Query: 425 ---AASTSLEKSYELPD 466
++ + Y LPD
Sbjct: 418 RQRGKENTIVREYVLPD 434
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 506 PEALFQPSFLGMESCGIHETV 568
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 32.3 bits (70), Expect = 0.32
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -2
Query: 355 FPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 188
F +SG + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 187 DTGGTTGGVQ 158
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 179 TGIVLDSGDGVSHTVPI 229
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 74 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 190
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 319 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 176
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -3
Query: 279 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 100
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 99 IWVIFSLLALGLR 61
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 262 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 164
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 77 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 226
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 62 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 190
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 371 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 511
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -3
Query: 153 STAWMATYMAGELKVSNMIWV---IFSLLALGL 64
S AW+ + + EL+ S +WV IFS+L +G+
Sbjct: 163 SVAWLCSLLYLELEASLYVWVPSLIFSILIIGV 195
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +1
Query: 205 WCLPHRTHLRRLRSAPRHPPSGLGWSRLDRLPHEDPHREGLLVHHHR*EGNRS 363
WC H+ R PR P G WS PH++ + L H H G S
Sbjct: 352 WCAKHQ---ERSHQQPRQPDQGQSWS-----PHKE-YNVTFLHHRHHPTGQSS 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,979
Number of Sequences: 59808
Number of extensions: 329591
Number of successful extensions: 1153
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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