Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31364
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    29   1.0  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   1.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.4  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   2.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   2.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   7.2  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    25   9.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.5  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    25   9.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 572 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 426
           +L + G  P+G+ +S++ +L TDF +++ + +   S  LS   T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 142 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 231
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 233 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 409
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 410 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 535
            SAS  P  S+   S T+  STP T  N   +    +T  S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -3

Query: 683 ANDET-APVLLDRNVPVRDGELWQWRFHGKHTVPGTAKDLMASGFVPLGNKNSLLYSLYT 507
           ++DE   PV   +N P+ +G+L  WR  G+ TV       +  G   + NK     +L +
Sbjct: 3   SSDEVDLPVYHLQNAPIENGKLNDWRSKGR-TVAFKLHPFLRKGLAYINNKEFDENTLKS 61

Query: 506 DFVSDFSSCLAWTSNLLSTVL 444
           D   +  S L +  +  ST++
Sbjct: 62  DKFEEVES-LVYEFSTPSTLI 81


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
 Frame = +1

Query: 340 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 495
           +++S   P+  DEG   D +  + RF +     + I     ++  V + +  +  H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364

Query: 496 DTKSVYREYNREFLLPKGTNP 558
             KSV RE NR + L K  NP
Sbjct: 365 IIKSVIREANRVYHLWKDCNP 385


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 734 KINYYQLWNICCLSGLVANDE 672
           K++Y+  W++ CL+ L + D+
Sbjct: 190 KLSYFNEWSLSCLASLYSRDD 210


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 142 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 264
           GDF  +  +FS   E     + ++EE M     E MN++S+
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 346 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 462
           +S+ SP +  EG   +LK R   +  TP+  +  T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 779 NNADFFLF*FINVN*KINYYQLWNIC 702
           +N+  FL+  +NV  +I     WNIC
Sbjct: 8   SNSFSFLYLMVNVQCRIKEIMYWNIC 33


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 533 NSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 423
           +S++ S  T  +S  SS    +S+  S+ +TTISSG+
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGI 564


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 123  KYPHQAWRFFGYRY 164
            +YP  AW+FF  RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,967
Number of Sequences: 5004
Number of extensions: 64525
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)