Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31364
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21990.1 68415.m02612 expressed protein contains Pfam profile...    31   0.89 
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   3.6  
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    29   4.7  
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    29   4.7  
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote...    28   6.2  
At3g32190.1 68416.m04102 hypothetical protein                          28   8.3  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   8.3  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   8.3  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   8.3  

>At2g21990.1 68415.m02612 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 252

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 466 LVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSFAVPGTVCLPWKRHCHNSPSR-TG 642
           L+   H+ K  +K V+R +   F       P A K   +PG   LP +    +S SR TG
Sbjct: 37  LLEPSHQHKKKSKKVFRVFRSVFRSFPIITPAACKIPVLPGG-SLPDQHRSGSSGSRVTG 95

Query: 643 TFLSRSTGAVS-SFATSP 693
           T      G VS S   SP
Sbjct: 96  TLFGYRKGRVSLSIQESP 113


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 380 VTARLSSFALMSASILPKRSLLR-LSTTNYWSTPNTRRNL 496
           VT+  S+   M  + LPKR L   L  TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 394 LKLRFDVSQYTPEEIVVKTVDNKLLV--HAKHEEKSDTKS--VYREYNREFLLPKGTNPE 561
           +K+RFD+   + E++ +   DN L++    K E+  D+ S      Y     LP     +
Sbjct: 138 IKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKD 197

Query: 562 AIKS 573
            IK+
Sbjct: 198 KIKA 201


>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 145 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 246
           D+ V+ T++ S+R  FD+  R  E   +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158


>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase ERECTA,
           Arabidopsis thaliana, EMBL:AC004484
          Length = 1048

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +3

Query: 582 PGDGVLTVEAPLPQLAITDRNIPIQKHWSGLIIRHESTEAADIP*LVIIYFLIYVY 749
           PG+  L++   +P  +  D ++P +KH S L IR  +   A +   ++I F+++ Y
Sbjct: 568 PGNSKLSLPGRIPADSSGDLSLPGKKHHSKLSIR-IAIIVASVGAAIMILFVLFAY 622


>At3g32190.1 68416.m04102 hypothetical protein
          Length = 358

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
 Frame = +1

Query: 208 KMEEEMSKFRSELMNRESNNF-FKXXXXXXXXXQHSDSRQLAEPSHWDSLNSPLIQDEGD 384
           K++EE+S  R  L   ESN +              S +R+  +    + +   ++  + +
Sbjct: 124 KIQEELSNARGRLSESESNAYDLSNQLSKLQAKSASKARKEVKGHGIEWIQGAIVFIQTE 183

Query: 385 GKTLKLRFDVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYRE-YNREFLLPKGT-NP 558
               +L  D+ +Y    +++    ++    ++ +E+S+ K+V  E  +R   LP  + NP
Sbjct: 184 KTRTELESDIKEYESNLLLLDQTHDE--DFSEEQERSELKAVLAEKRSRLAALPSSSFNP 241

Query: 559 EAIKSF 576
           +  + F
Sbjct: 242 QQFEEF 247


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 127 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF 234
           IP++  D   +   F S+R   + +++ M++E +KF
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKF 293


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 421 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 504
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 421 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 504
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,894
Number of Sequences: 28952
Number of extensions: 333800
Number of successful extensions: 1188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)