Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31363
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    36   0.002
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    30   0.086
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   1.8  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   2.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   2.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   2.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   3.2  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   4.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    24   5.6  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    24   7.5  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    24   7.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    23   9.8  

>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +2

Query: 20  MINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTNH 199
           + N + YG G+ +F+TN  T   FS +I+ G   +N    V      + G + S LG   
Sbjct: 423 LANDSEYGLGSGVFSTNPKTLEFFSNNIEAGMCSLN-NYHVVTHELPWIGWKHSGLGVG- 480

Query: 200 FCGKQGLDFYTELKMVVSF 256
              K G + Y  LK +  +
Sbjct: 481 -LSKHGYNEYMRLKQITQY 498


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 30.3 bits (65), Expect = 0.086
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 26  NSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTNHFC 205
           N +  G    +FT N +T    + +++VG VG N+ + V     SF G + S  G     
Sbjct: 418 NDSDVGLAGYVFTNNLSTMIHVAKELEVGLVGANIEM-VDEPFISFGGIKQSGFGKE--A 474

Query: 206 GKQGLDFYTELKMV 247
           G+ G+  +  +K +
Sbjct: 475 GRLGVQEFMVVKEI 488


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 26  NSNPYGNGTAIFTTNGATARKFSADIDVGQV--GVNVPIPVPLS 151
           +S P+GN T   + +G+T    + +   G V   V  P   PLS
Sbjct: 567 SSTPFGNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLS 610


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 20  MINSNPYGNGTAIFTTNG 73
           +++SNP  NG   F TNG
Sbjct: 224 LLSSNPTANGQVFFITNG 241


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 264 SLQNDTTIFSSV*KSSPCFPQKWLV 190
           S+  +  I S V   +PCF  +WL+
Sbjct: 583 SVSYEAVIISMVLSKNPCFSSEWLI 607


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 268 ALPPKRYYHLQFGVEVQPLLPAEVVSS 188
           A+PP     L FG++ QP +P   V S
Sbjct: 609 AIPPGSDPILNFGIQYQPFIPFTAVPS 635


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 179  SLLGTNHFCGKQGLDFYTELKMVV 250
            SL     FC  Q  DFY+EL+ ++
Sbjct: 1009 SLKAKEIFCSLQNEDFYSELQSII 1032


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 288 GFAFYTSLSLQNDTTIFSSV*KSSPCFPQKWLVP 187
           GF+   ++  +N+T I   + ++SPC  Q  + P
Sbjct: 276 GFSLSDAMKFENETFIAKKILENSPCPNQPSIQP 309


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 244 HLQFGVEVQPLLPAEVVSSQ*TSARSRKREHRQRHGNGHVY 122
           H  F     P  P+E+ S   +    ++R+  QR  N H +
Sbjct: 336 HEYFTTPPYPANPSELQSYSASHEYDKRRKREQRDANSHAF 376


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 339 FFFFF*LTYCCVRIHXPGFAFYTSLSLQNDTT 244
           ++F F L+     ++  G  FYTS+   +++T
Sbjct: 226 YYFIFLLSVVLSALYLTGLGFYTSIGSFHEST 257


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = -2

Query: 154 HRQRHGNGHVYAHLTDVDIRGELPSRRAISGENSRSIPVRVRVDHPEWLR 5
           HR  H  G+  A LT         + RAI  E    +    R+ H  + R
Sbjct: 231 HRASHTTGYAAASLTSTSFTPVTKNERAIIAEEDYMLN-HTRIKHKGYAR 279


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 339 FFFFF*LTYCCVRIHXPGFAFY 274
           FF F    + C+R   PGF  Y
Sbjct: 358 FFIFSLFFFLCMRNFFPGFTIY 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,224,828
Number of Sequences: 5004
Number of extensions: 20789
Number of successful extensions: 63
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)