Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31363
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476... 110 2e-25
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 33 0.044
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 32 0.10
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 1.7
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 28 1.7
02_05_1138 + 34379697-34380902 28 2.2
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 27 2.9
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 27 2.9
10_02_0006 + 4096094-4096987,4098937-4098951 27 5.1
07_03_0604 + 19903654-19904598 27 5.1
12_02_1124 + 26301884-26303725 26 6.7
08_02_0360 + 16196712-16197560,16198126-16198875 26 8.9
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 26 8.9
02_01_0677 - 5039344-5039793,5040415-5040462,5040540-5040776,504... 26 8.9
>07_01_0637 +
4767021-4767083,4767175-4767249,4767339-4767500,
4767624-4767702,4767922-4768076,4768225-4768288,
4768928-4769007,4769366-4769431,4769932-4769982,
4770087-4770238,4770270-4770287,4770323-4770413,
4771156-4771236,4771330-4771407,4772315-4772350,
4772425-4772468,4772567-4772645,4773035-4773125,
4773268-4773374
Length = 523
Score = 110 bits (265), Expect = 2e-25
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +2
Query: 17 RMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTN 196
+++N N YGNG +IFTT+G +ARKF DI+ GQVG+NVPIPVPL FSF+G++ S G
Sbjct: 426 QIVNRNKYGNGASIFTTSGVSARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDL 485
Query: 197 HFCGKQGLDFYTELKMVVSFWRES 268
+F GK G+ F+T++K V W+ES
Sbjct: 486 NFYGKAGVQFFTQIKTVTQQWKES 509
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 33.5 bits (73), Expect = 0.044
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +2
Query: 17 RMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTN 196
RM N G IFT + + + S ++ G VGVN I + + F G + S LG
Sbjct: 476 RMANDTNAGLAAYIFTKSIPRSWRVSEALEYGLVGVNEGI-ISTEVAPFGGVKQSGLGRE 534
Query: 197 HFCGKQGLDFYTELKMVV 250
K G+D Y E+ + +
Sbjct: 535 G--SKYGMDEYLEVSIAI 550
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 32.3 bits (70), Expect = 0.10
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +2
Query: 17 RMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVN-VPIPVPLSMFSFSGTRGSLLGT 193
++ N + YG G A+F+ N A K ++ + G +N F G + S G
Sbjct: 429 KLANDSKYGLGCAVFSGNQKRAIKIASQLHCGVAAINDFASSYMCQSLPFGGVKDS--GF 486
Query: 194 NHFCGKQGLDFYTELKMVV 250
F G +GL +K VV
Sbjct: 487 GRFAGVEGLRACCLVKAVV 505
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 199 VVSSQ*TSARSRKREHRQRHGNGHVYAHLTDVDIRG-ELPSRRAISGENSRSIP 41
V S S+ S + E Q GNG V+ HL+ ++ ++P R S + S P
Sbjct: 286 VTGSVSVSSSSGRGESGQSSGNGRVFEHLSFPPLQDQDIPDARMDSAPDETSFP 339
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 28.3 bits (60), Expect = 1.7
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = +2
Query: 17 RMINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTN 196
R N+ PYG +FT A + + VG V VN V + F G + S +G
Sbjct: 500 RRANATPYGLAAGVFTQRLDAANTLARALRVGTVWVNT-YDVFDAAVPFGGYKMSGVGRE 558
Query: 197 HFCGKQGLDFYTELKMVVS 253
G L Y + K VV+
Sbjct: 559 K--GVYSLRNYLQTKAVVT 575
>02_05_1138 + 34379697-34380902
Length = 401
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 151 RQRHGNGHVYAHLTDVDIRGELPSRRAISGENSRSIPVRV 32
R+ G G Y TDVD+RG++ A GE R P+ V
Sbjct: 93 RRERGGGGEYRD-TDVDVRGDVVRYDARRGEWGRCAPLLV 131
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 26 NSNPYGNGTAIFTTNGATARKFSADIDVGQVGVN 127
N++ YG +FT N TA + + VG V VN
Sbjct: 469 NASQYGLAAGVFTNNLNTANTLTRALRVGTVWVN 502
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 140 VPLSMFSFSGTRGSLLGTNHFCGKQGLDFYTELKMVVSFWRESDV*NAKPGXCM 301
+P+ S+ + FC D+ +++M+V W +D +K G C+
Sbjct: 402 LPILKLSYEDLPSQMKQCFAFCAVFPKDYEIDVEMLVKLWMANDFIPSKDGVCL 455
>10_02_0006 + 4096094-4096987,4098937-4098951
Length = 302
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 30 RTLTGMERLFSPLMARRLGSSPRISTS 110
R+L G+ +++ PLM+ RLG+ + S
Sbjct: 53 RSLAGLAKMYGPLMSLRLGAVTTVVVS 79
>07_03_0604 + 19903654-19904598
Length = 314
Score = 26.6 bits (56), Expect = 5.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -2
Query: 301 HTXARFRVLHVALPPKRYYHLQFGVEVQPLLPAEVVSSQ*TSARSRKREHRQRHGNGH 128
H R R +HVA+ R H + G E Q P A ++ R R+ HG+GH
Sbjct: 103 HRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPR-------VPAGAQLRRRRRAHGHGH 153
>12_02_1124 + 26301884-26303725
Length = 613
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 74 ATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTNHFCGKQ--GLDFY 229
AT SA V V P P P MF +G + CGK+ GL+F+
Sbjct: 41 ATNSVLSAPSSVPPAYVPPPPPPPTKMFPEAGDAAAAKAAARRCGKKKDGLNFF 94
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 118 HLTDVDIRGELPSRRAISGE 59
H+T IRG+ P+RR +GE
Sbjct: 329 HVTRTKIRGDSPARRPTTGE 348
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +2
Query: 125 NVPIPVPLSMFSFSGTRGSLLGTNHFCGKQGLDFYTELKMVVS 253
NVP+ + G+ G F GK GL E M VS
Sbjct: 254 NVPMRASMDEIKDGGSAGKGSAKRQFAGKDGLSSELEFHMSVS 296
>02_01_0677 -
5039344-5039793,5040415-5040462,5040540-5040776,
5040862-5040898,5042474-5042491,5042801-5043153
Length = 380
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 139 GNGHVYAHLTDVDIRGELPSRRAISGENSRSIPVRVR 29
G G V LTDV RG + +RR + + + + VR
Sbjct: 44 GGGGVVVELTDVPRRGNVEARRLRTKRGTEVVAMYVR 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,281,989
Number of Sequences: 37544
Number of extensions: 150632
Number of successful extensions: 521
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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