Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31363
(341 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 64 3e-11
SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 64 3e-11
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 59 1e-09
SB_36984| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1) 27 5.3
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41) 27 5.3
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_5498| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_3201| Best HMM Match : C2 (HMM E-Value=0.0019) 26 7.0
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 26 7.0
SB_19971| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 26 9.2
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 26 9.2
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 26 9.2
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13) 26 9.2
>SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 64.1 bits (149), Expect = 3e-11
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +2
Query: 20 MINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPV 142
+IN NPYGNGTAIFT +GA ARKF+ +VGQ+G+NVP+ V
Sbjct: 155 IINRNPYGNGTAIFTKSGAIARKFAQKANVGQIGINVPVVV 195
>SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 64.1 bits (149), Expect = 3e-11
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +2
Query: 20 MINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPV 142
+IN NPYGNGTAIFT +GA ARKF+ +VGQ+G+NVP+ V
Sbjct: 155 IINRNPYGNGTAIFTKSGAIARKFAQKANVGQIGINVPVVV 195
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 58.8 bits (136), Expect = 1e-09
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +2
Query: 116 VGVNVPIPVPLSMFSFSGTRGSLLGTNHFCGKQ 214
+G+NVPIPVPL MFSF+G+RGS LG +HF GKQ
Sbjct: 1 IGINVPIPVPLPMFSFTGSRGSFLGDSHFYGKQ 33
>SB_36984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 163 KREHRQRHGNGHVYAHLTDVDI 98
K + Q+HG HV AH T +DI
Sbjct: 103 KSLNSQKHGRAHVLAHPTCIDI 124
>SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)
Length = 301
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 145 RHGNGHVYAHLTDVDIRGELPSRRAISGENSRSIPVRV 32
R NG Y+H RG P+RRA G ++ S+ V+V
Sbjct: 63 RESNG--YSHAKATPERGGSPARRASCGIDNNSMRVKV 98
>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
Length = 536
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -2
Query: 307 CAHTXARFRVLHVALPPKRYYHLQFGVEVQPLLPA-EVVSSQ*TSARSRKREHRQRHGNG 131
C +R + ++ P R + + +QP A + VSS + ++ RQR G
Sbjct: 317 CPDGTSRRMIADQSVAPPRAPDPERVLALQPATAARQSVSSNESGPANKNSIRRQRQGEK 376
Query: 130 HVYAHLTDVDIRGELPSRRAISGE 59
V+ + RG +P + GE
Sbjct: 377 EVHGMARVSEARGLMPGNQYAGGE 400
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 8 KPFRMINSN-PYGNGTAIFTTNGATARKFSADIDVGQ---VGVNVPIPVPLSMFSFSGTR 175
+P+R ++ P+ T+ G +RK+S+ + + N P+S SF R
Sbjct: 210 RPYRNSSTEAPFATPAEDGTSEGTPSRKYSSLLKADENLSYDTNREEDSPISTESFISKR 269
Query: 176 GSLLGTN 196
GS +GT+
Sbjct: 270 GSAVGTD 276
>SB_5498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 225 KSSPCFPQKWLVPSKLPRVPENE 157
K SP PQ L P +PR P NE
Sbjct: 32 KRSPKVPQLILGPETIPRSPRNE 54
>SB_3201| Best HMM Match : C2 (HMM E-Value=0.0019)
Length = 278
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 247 YHLQFGVEVQPLLPAEVVSSQ*TSARSRKREH 152
+ Q VE++ +PA VSS+ +SA SR H
Sbjct: 234 FKCQTPVELEQAIPANKVSSRTSSAASRTASH 265
>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1124
Score = 26.2 bits (55), Expect = 7.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 140 VPLSMFSFSGTRGSLLGTNHF-CGKQGLDFYTELKMVVSFWRES 268
V + +FS SGTR +L T + K GL +T M V W E+
Sbjct: 790 VSIDLFSPSGTRNEMLSTRRYDDSKNGLHDWT--FMTVHNWGEN 831
>SB_19971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 225 KSSPCFPQKWLVPSKLPRVPENE 157
K SP PQ L P +PR P NE
Sbjct: 3 KRSPKVPQLILGPETIPRSPRNE 25
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 25.8 bits (54), Expect = 9.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 225 KSSPCFPQKWLVPSKL 178
++ PC PQ W++ SK+
Sbjct: 1361 RTCPCHPQSWIIRSKI 1376
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 232 GVEVQPLLPAEV--VSSQ*TSARSRKREHRQRHGNGH 128
G+ P LP ++ S+ + +RE R+R GNG+
Sbjct: 472 GLGYDPSLPPDIDRFESRVREIQQERREERERRGNGY 508
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 268 ALPPKRYYHLQFGVEVQPLLPAEVVSSQ 185
++PP RY HL F + PL + S+
Sbjct: 93 SIPPSRYIHLPFPLHPSPLPATSIPPSR 120
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 130 HVYAHLTDVDIRGELPSRRAISGENSRSIPVRVRVDHP 17
H YA+ + +R +R +I + + PV ++V HP
Sbjct: 285 HPYANRVSIKVRHPYANRVSIKVRHPYANPVSIKVRHP 322
>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 145 RHGNGHVYAHLTDVDIRGELPSRRAISGENSRSIPVRV 32
R NG Y+H RG P+RRA G ++ S+ V V
Sbjct: 389 RESNG--YSHAKATPERGGSPARRASCGIDNNSMRVEV 424
>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
Length = 473
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 145 RHGNGHVYAHLTDVDIRGELPSRRAISGENSRSIPVRV 32
R NG Y+H RG P+RRA G ++ S+ V V
Sbjct: 252 RESNG--YSHAKATPERGGSPARRASCGIDNNSMRVEV 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,579
Number of Sequences: 59808
Number of extensions: 154874
Number of successful extensions: 423
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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