Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31363
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena...   110   3e-25
At5g25280.2 68418.m02999 serine-rich protein-related contains so...    31   0.20 
At5g25280.1 68418.m02998 serine-rich protein-related contains so...    31   0.20 
At5g11090.1 68418.m01295 serine-rich protein-related contains so...    31   0.20 
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica...    31   0.27 
At1g05800.1 68414.m00606 lipase class 3 family protein similar t...    29   0.61 
At1g51440.1 68414.m05790 lipase class 3 family protein similar t...    27   4.3  
At2g06500.1 68415.m00720 hAT dimerisation domain-containing prot...    26   5.7  
At5g12940.1 68418.m01484 leucine-rich repeat family protein cont...    26   7.6  
At3g13225.1 68416.m01660 WW domain-containing protein contains P...    26   7.6  
At5g66920.1 68418.m08435 multi-copper oxidase type I family prot...    25   10.0 
At5g63000.1 68418.m07904 expressed protein                             25   10.0 
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    25   10.0 
At3g25840.1 68416.m03219 protein kinase family protein contains ...    25   10.0 
At2g36145.1 68415.m04437 expressed protein                             25   10.0 

>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
           putative similar to methylmalonate-semialdehyde
           dehydrogenase [acylating], mitochondrial precursor
           (MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
          Length = 607

 Score =  110 bits (264), Expect = 3e-25
 Identities = 46/82 (56%), Positives = 61/82 (74%)
 Frame = +2

Query: 20  MINSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTNH 199
           +IN N YGNG AIFT++GA ARKF  DI+ GQ+G+NVPIPVPL  FSF+G + S  G  +
Sbjct: 511 IINKNKYGNGAAIFTSSGAAARKFQMDIEAGQIGINVPIPVPLPFFSFTGNKASFAGDLN 570

Query: 200 FCGKQGLDFYTELKMVVSFWRE 265
           F GK G+DF+T++K V   W++
Sbjct: 571 FYGKAGVDFFTQIKTVTQQWKD 592


>At5g25280.2 68418.m02999 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 29  SNPYGNGTAIFTTNGATARKFSADIDVGQVG 121
           +NP+G GTA +TTNG   R+ +    + ++G
Sbjct: 146 ANPHGQGTASYTTNGLNMRRSAMTNSLVRIG 176


>At5g25280.1 68418.m02998 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 29  SNPYGNGTAIFTTNGATARKFSADIDVGQVG 121
           +NP+G GTA +TTNG   R+ +    + ++G
Sbjct: 146 ANPHGQGTASYTTNGLNMRRSAMTNSLVRIG 176


>At5g11090.1 68418.m01295 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 217

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 29  SNPYGNGTAIFTTNGATARKFSADIDVGQVG 121
           +NP+G GTA +TTNG   R+ +    + ++G
Sbjct: 143 ANPHGQGTASYTTNGLNMRRSAMTNSLVRIG 173


>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
           to aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:8574427; similar to mitochondrial aldehyde
           dehydrogenase [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; identical to cDNA aldehyde
           dehydrogenase AtALDH2a GI:20530140
          Length = 538

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = +2

Query: 26  NSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTNHFC 205
           N   YG    +FT N  TA + S  +  G V VN    V  +   F G + S  G     
Sbjct: 458 NETKYGLAAGVFTKNLDTANRVSRALKAGTVWVNC-FDVFDAAIPFGGYKMS--GNGREK 514

Query: 206 GKQGLDFYTELKMVVS 253
           G   L+ Y ++K VV+
Sbjct: 515 GIYSLNNYLQIKAVVT 530


>At1g05800.1 68414.m00606 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 471

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 104 DVGQVGVNV---PIPVPLSMFSFSGTRGSLLGTNHFCGKQGL 220
           D+ ++G+N      PVP+++FSF+G R   LG    C + G+
Sbjct: 298 DIAELGMNQRRDEKPVPVTVFSFAGPRVGNLGFKKRCEELGV 339


>At1g51440.1 68414.m05790 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706, lipase [Dianthus caryophyllus] GI:4103627;
           contains Pfam profile PF01764: Lipase
          Length = 527

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = +2

Query: 41  GNGTAIFTTN---GATARKFSADIDVGQVGVN-VP---IPVPLSMFSFSGTRGSLLGTNH 199
           G+ T+I  T    GA+    SA  D+ ++ +N VP     +P+++FSFSG R   L    
Sbjct: 291 GHKTSITVTGHSLGASLALVSA-YDIAELNLNHVPENNYKIPITVFSFSGPRVGNLRFKE 349

Query: 200 FCGKQGL 220
            C + G+
Sbjct: 350 RCDELGV 356


>At2g06500.1 68415.m00720 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 582

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 160 REHRQRHGNGHVYAHLTDVDIRGELPSRRA 71
           REH ++ G G +Y+H     I+ EL S  A
Sbjct: 190 REHIRKIGAGEIYSHYLSPKIQNELISMLA 219


>At5g12940.1 68418.m01484 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 371

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 26  NSNPYGNGTAIFTTNGATARKFSADIDVGQVGVNVPIPVPLSMFSFSGTRGSLLGTNHFC 205
           N N  GN       N    R +   +D+    +  PIP  ++  SF G     +  NH C
Sbjct: 281 NLNLSGNLITGSIPNTFGPRSYFTVLDLANNRLQGPIPASITAASFIGHLD--VSHNHLC 338

Query: 206 GK 211
           GK
Sbjct: 339 GK 340


>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
           profile PF00397: WW domain
          Length = 863

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -2

Query: 250 YYHLQFGVEVQPLLPAEVVS---SQ*TSARSRKREHRQRHGNGHVYAHLTDVDIR 95
           + H  F       LP+ ++S   S     RS KR H   H N  +  ++ +V++R
Sbjct: 283 HVHTYFDAGAATDLPSRLLSQIESLLEKLRSLKRSHGNFHSNEQITKYILEVEVR 337


>At5g66920.1 68418.m08435 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 546

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 128 VPIPVPLSMFSFSGTRGSLLGTNHFCGKQGLD 223
           +PIP PL    F+   G    TNH   +Q LD
Sbjct: 159 IPIPYPLPTADFTLLVGDWFKTNHKTLQQRLD 190


>At5g63000.1 68418.m07904 expressed protein
          Length = 201

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 270 SLSLQNDTTIFSSV*KSSPCFPQKWLVPSKLPRVPENENIDS 145
           SL+ +    +  SV  ++ CFP  W+    + +  E  N+D+
Sbjct: 137 SLAWRARNVLLGSVLGATVCFPLGWVQLKLMKKANEGNNVDT 178


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 172 RSRKREHRQRHGNGHVYAHLTDVDIRGELPSRRAISGEN 56
           R R RE R+R+G  H   H  + +   E    R+  G N
Sbjct: 644 RDRHREERERYGGDHRTRHRDEPEHDEEWNRGRSSRGHN 682


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 193 SSQ*TSARSRKREHRQRHGNGHVYAHLTDVDIRGELPS 80
           SS  T   S++ +HR    + H + H  D     E+PS
Sbjct: 20  SSDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPS 57


>At2g36145.1 68415.m04437 expressed protein
          Length = 186

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 119 GVNVPIPVPLSMFSFSGTRGSLLG 190
           G N+P+PVPL +   SG  G+ LG
Sbjct: 98  GANLPLPVPLKVDRISG--GARLG 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,499,135
Number of Sequences: 28952
Number of extensions: 114229
Number of successful extensions: 368
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)