Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31361
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    38   0.001
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    29   0.38 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.88 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   3.5  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +3

Query: 18  ELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKV 149
           ELTH L +LGE+L   EVA++ ++     D DG+I Y  F + +
Sbjct: 106 ELTHVLTSLGERLSQEEVADMIREA--DTDGDGVINYEEFSRVI 147


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 15  AELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVMA 155
           A+    +  LGEKL D+EV  + ++  DP  + G   Y  F++++MA
Sbjct: 98  AKFADYMKTLGEKLSDNEVQLMVQEA-DP-TNSGSFDYYDFVQRIMA 142


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 304  APPEELSPPRALPAPVPQSRASVF*GPSHRT 212
            APP    PP A P P+P S A     P  R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  LGEKLDDSEVAEVTKDCMDPED 107
           L EK+ D +   +  DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,495
Number of Sequences: 5004
Number of extensions: 28924
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)