Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31360
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   144   7e-36
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   144   7e-36
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.001
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.0  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   4.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   7.0  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  144 bits (349), Expect = 7e-36
 Identities = 63/101 (62%), Positives = 80/101 (79%)
 Frame = +1

Query: 103 KLPERRLRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
           K P   +    + +KCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EK
Sbjct: 40  KTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEK 99

Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 405
           RH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 100 RHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 84  NVGLGFKTPREAIEGTYIDKE 146
           +VGLGFKTP EAI G Y+DK+
Sbjct: 34  DVGLGFKTPAEAIYGEYVDKK 54


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  144 bits (349), Expect = 7e-36
 Identities = 63/101 (62%), Positives = 80/101 (79%)
 Frame = +1

Query: 103 KLPERRLRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
           K P   +    + +KCPF G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EK
Sbjct: 40  KTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEK 99

Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 405
           RH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 100 RHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 84  NVGLGFKTPREAIEGTYIDKE 146
           +VGLGFKTP EAI G Y+DK+
Sbjct: 34  DVGLGFKTPAEAIYGEYVDKK 54


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 193 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 372
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 373 SKTVRFNVLKV 405
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 112 LGVLKPKPTLLMVTHVLPLHATFPVQENGGLFLKRFS 2
           L  L  KPTL ++++++       +QE   LFLK F+
Sbjct: 415 LASLLVKPTLCLISYLMIAKKMVVLQEANRLFLKSFA 451


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 252 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 145
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 328 VEIGDIVTIGECRPLSKTVRFNVL 399
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,393
Number of Sequences: 5004
Number of extensions: 39475
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)