Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31360
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 7e-42
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.063
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34) 33 0.11
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 3.1
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3) 28 5.5
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 5.5
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 5.5
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33) 27 7.2
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 167 bits (405), Expect = 7e-42
Identities = 72/101 (71%), Positives = 88/101 (87%), Gaps = 1/101 (0%)
Frame = +1
Query: 106 LPERRLRVPT-LTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
LPER T + +KCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEK
Sbjct: 55 LPEREAIEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEK 114
Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 405
RH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 115 RHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155
Score = 34.3 bits (75), Expect = 0.063
Identities = 20/35 (57%), Positives = 22/35 (62%), Gaps = 12/35 (34%)
Frame = +3
Query: 78 ISNVGLGFKTP------------REAIEGTYIDKE 146
+ NVGLGFKTP REAIEGTYIDK+
Sbjct: 35 VRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKK 69
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 35.5 bits (78), Expect = 0.027
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -1
Query: 231 HDSSLHLHFLNDAGEDAAADRNVTSEGTLPCQCRYPQSPLWEF*SLNQHY 82
H S+ FL + + A++ SE P +C QS LWE SL QHY
Sbjct: 474 HISNAGPLFLTENSDTLASEDPFLSEEEDPAKCNALQSSLWELKSLQQHY 523
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 337 GDIVTIGECRPLSKTVRFNVLKV 405
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
Length = 208
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +1
Query: 157 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 336
T + R ++ G+V KM +TI + + P Y + + + H + +
Sbjct: 5 TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62
Query: 337 GDIVTIGECRPLSKTVRFNVLKV 405
GD V I E RPLS T R+ ++++
Sbjct: 63 GDRVRIMETRPLSATKRWRLVEI 85
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 198 DAGEDAAADRNVTSEGTLPCQCRYPQS 118
D G N+TSEG PC C+ P S
Sbjct: 58 DCGRCKPGFYNMTSEGCRPCDCKGPNS 84
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 330 HVPEARRQMHGHIPVPFLEP 271
HV +A R HG++P+P L P
Sbjct: 82 HVDQACRSFHGNLPLPVLAP 101
>SB_46952| Best HMM Match : Gemini_AL2 (HMM E-Value=1.3)
Length = 258
Score = 27.9 bits (59), Expect = 5.5
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +1
Query: 10 VSETGHRFPEQERWHEEEGHASP*VMLV*ASKLPERRLRVPTLTRKCPFTGNVSIRGRIL 189
V ETGH PE+E H HA K E++ + T R+C ++ + L
Sbjct: 80 VKETGHNDPEKE--HSNTVHAQ---------KNHEQKQDLKT--RRCSVPLPPAVNAQTL 126
Query: 190 TGVVQKMKMQRTIVIRRDYLHYL--PKYNRFEKRHRNMSVHLSP 315
+ + + + R + HYL PK NRFE + + +SP
Sbjct: 127 AE--RNRQRRASHAGARPFRHYLYGPKLNRFENDVEELEIVVSP 168
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 121 LRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDY 246
L + +LTR P+ G I I TGV + R I +R+ Y
Sbjct: 581 LLINSLTRVSPYAGPTLIINLIFTGVFTLEAVLRIIALRQHY 622
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 184 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 321
I+ VV K K + VI RD+ Y ++ +R VH SP F
Sbjct: 64 IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109
>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 732
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 396 NIESNCFGQRSAFADRYNIT-NLHVPEARRQMHGHIPVPFLEPIVFG*VVKVIAADHDSS 220
N+ ++ S + YNIT NLH+ E P+P FG + + A D++ S
Sbjct: 76 NLMADLSSDGSEVSKTYNITINLHLMEVLSSDGNESPIPRKGTFDFGGMQDIAALDYEES 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,248
Number of Sequences: 59808
Number of extensions: 306362
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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