Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31360
         (528 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   142   7e-36
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           25   1.2  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  142 bits (344), Expect = 7e-36
 Identities = 66/100 (66%), Positives = 81/100 (81%)
 Frame = +1

Query: 103 KLPERRLRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
           K P+  +    + +KCPFTG++SIRGRILTGVV+K  +   + IRRDYL ++ KY+ FEK
Sbjct: 40  KTPKEAITGTYIDKKCPFTGHISIRGRILTGVVRKCIV--LLYIRRDYLQFIRKYDTFEK 97

Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLK 402
           R+RNM +HLSPCFRDVE GDIVT+GECRPLSKTVRFNVLK
Sbjct: 98  RNRNMRLHLSPCFRDVEAGDIVTLGECRPLSKTVRFNVLK 137



 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +3

Query: 84  NVGLGFKTPREAIEGTYIDKE 146
           ++GLGFKTP+EAI GTYIDK+
Sbjct: 34  SIGLGFKTPKEAITGTYIDKK 54



 Score = 28.7 bits (61), Expect = 0.13
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 5  KAFQKQATVFLNRKGGMKRKDMRHH 79
          +AFQKQ  + LNRK   ++K +R H
Sbjct: 8  RAFQKQLGINLNRKNVSRKKGLRMH 32


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 176 RIETLP-VKGHFLVNVGTLNRLSG 108
           R+E  P +  H LVNVGT++ L G
Sbjct: 260 RVEMAPFIADHVLVNVGTVDLLHG 283


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,817
Number of Sequences: 2352
Number of extensions: 10760
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48628785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)