Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31360
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   143   7e-35
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           139   1e-33
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           136   7e-33
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.010
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.36 
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    28   3.4  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.9  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  143 bits (346), Expect = 7e-35
 Identities = 65/101 (64%), Positives = 78/101 (77%)
 Frame = +1

Query: 103 KLPERRLRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
           K P   +    + +KCPFTG VSIRGRIL+G     KMQRTI++RRDYLH++ KY R+EK
Sbjct: 44  KTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEK 103

Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 405
           RH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 104 RHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +3

Query: 84  NVGLGFKTPREAIEGTYIDKE 146
           N+GLGFKTPREAIEGTYID++
Sbjct: 38  NIGLGFKTPREAIEGTYIDQK 58


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/101 (62%), Positives = 76/101 (75%)
 Frame = +1

Query: 103 KLPERRLRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
           K P   +    + +KCPFTG VSIRGRIL G     KMQRTI++RRDYLH++ KY R+EK
Sbjct: 44  KTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEK 103

Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 405
           RH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 104 RHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +3

Query: 84  NVGLGFKTPREAIEGTYIDKE 146
           N+GLGFKTPREAI+G Y+DK+
Sbjct: 38  NIGLGFKTPREAIDGAYVDKK 58


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  136 bits (330), Expect = 7e-33
 Identities = 63/101 (62%), Positives = 75/101 (74%)
 Frame = +1

Query: 103 KLPERRLRVPTLTRKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEK 282
           K P   +    +  KCPFTG VSIRGRIL G     KMQRTI++RR+YLH++ KY R+EK
Sbjct: 44  KTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEK 103

Query: 283 RHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 405
           RH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 104 RHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 84  NVGLGFKTPREAIEGTYIDKE 146
           N+GLGFKTPREAI+G YID +
Sbjct: 38  NIGLGFKTPREAIDGAYIDSK 58


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 193 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 369
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 370 LSKTVRFNVLKV 405
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +1

Query: 181 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 360
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 361 CRPLSK 378
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 181 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 360
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 361 CRPLSKTVRFNVLKV 405
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 87  VGLGFKTPREA-IEGTYIDKEVSLHW*RFDXXXXXXXXXSENEDAENYR 230
           VG  +K PR A I    I +++ L W R+D          E E AE ++
Sbjct: 392 VGRSYKIPRTAPIRTRKISRDMLLFWKRYDKQMAEERKKQEKEAAEAFK 440


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 178 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 294
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,146,236
Number of Sequences: 28952
Number of extensions: 212553
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)