Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31357
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.33
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 2.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 27 4.1
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 7.2
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 7.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 9.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 128 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 241
TLP +T +T R + PPS SNR + + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 160 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 297
N+ S+ + Q + + IY PD Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 168 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 40
LFV+ VEY PG L LR GS +T+ +FL CG+++C
Sbjct: 83 LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 158 RTKRPHSDPPSLTASNRVSRTWTPASVS 241
R RP +PP L+ASN T P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 650 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVY 769
WP ++ + KT L W E L + + +GG Q Y
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWY 234
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 292 IIEDYHNGFKKTDKHPPKNW 351
I++ ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 173 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 21
E + F RL T +F S + E L AS S+VAA I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +3
Query: 423 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 551
P+ VP P P VPV + GQ L PV P LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 373 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 495
N+D A EF++ T S++G N C+ + YK DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 143 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 27
+SLV++ ++ +LKP + F V A VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,875
Number of Sequences: 5004
Number of extensions: 55940
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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