Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31357
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 31 0.67
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 31 0.67
At1g18420.1 68414.m02300 expressed protein contains Pfam profile... 30 2.1
At5g14710.1 68418.m01725 expressed protein 29 2.7
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 29 2.7
At1g07560.1 68414.m00809 leucine-rich repeat protein kinase, put... 29 3.6
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 29 4.7
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 29 4.7
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 28 6.3
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 6.3
At1g24706.1 68414.m03104 expressed protein 28 6.3
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria... 28 8.3
At4g36910.1 68417.m05232 CBS domain-containing protein contains ... 28 8.3
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 31.5 bits (68), Expect = 0.67
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 29 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 208
E ++ +P P++N R S S PT+S +S + K + + KRP S PPS T+ +
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88
Query: 209 VSRTWT---PASVSTRRTPSRTP 268
R + PAS S R + R P
Sbjct: 89 PIRDLSIDLPAS-SRRLSTGRLP 110
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 31.5 bits (68), Expect = 0.67
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 29 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTASNR 208
E ++ +P P++N R S S PT+S +S + K + + KRP S PPS T+ +
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88
Query: 209 VSRTWT---PASVSTRRTPSRTP 268
R + PAS S R + R P
Sbjct: 89 PIRDLSIDLPAS-SRRLSTGRLP 110
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 581
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 307 HNGFKKTDKHPPKNWGDVDTLGNLDPA 387
H + PPKNW DV T NL A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496
>At5g14710.1 68418.m01725 expressed protein
Length = 124
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 683 NKTFLVWCNEEDHLRIISMQMG 748
NKT +V C+ EDH+ II+ Q+G
Sbjct: 22 NKTEIVICSYEDHILIIATQIG 43
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 674 HNENKTFLV-WCNEEDHLRII-SMQMGGDLQQ 763
H+ N LV +CNEEDHL ++ GDL+Q
Sbjct: 617 HHTNLVNLVGYCNEEDHLALVYEYAANGDLKQ 648
>At1g07560.1 68414.m00809 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 856
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 668 IYHNENKTFLVWCNEEDHLRIISMQM-GGDLQQ 763
+YH + + +C+E+DHL +I M GDL++
Sbjct: 606 VYHTNLVSLVGYCDEKDHLALIYQYMVNGDLKK 638
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 10 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 123
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 10 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 123
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 337 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 489
PP +G D++TL + AG++V + + G+ EG+ F P + Y E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 477 GDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPVQGRA 614
G G+ R P+ P RA+ LPP P A RPLP R+
Sbjct: 533 GSRGRRPRPPLPPPARARP--LPPPARARPMPPPARARPLPPPARS 576
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 527 SSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAG 381
S +RLD S + D R KGY +R R RV+ ++ P G
Sbjct: 1461 SVEARLDLNKTVTDDQSTHRDQDRSKDKGYERQDRDHRERVDRSDKPRG 1509
>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
identical to SP|Q96252 ATP synthase delta' chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile PF02823: ATP synthase,
Delta/Epsilon chain, beta-sandwich domain
Length = 203
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 125 STLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVSTRRT 253
STL + A + P+ DPP ++ R TP+S+ T+ T
Sbjct: 32 STLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLT 74
>At4g36910.1 68417.m05232 CBS domain-containing protein contains
Pfam profile PF00571: CBS domain
Length = 236
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 539 NVPLS-SPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSV 363
+VPLS +P R P + + + SV+ K S P ++R+ + +S AGS L +
Sbjct: 7 SVPLSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTN 66
Query: 362 STSPQ 348
S+SP+
Sbjct: 67 SSSPR 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,272,044
Number of Sequences: 28952
Number of extensions: 320024
Number of successful extensions: 975
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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