Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31356
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   127   1e-30
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    35   0.012
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    30   0.34 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    30   0.34 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    30   0.34 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    30   0.34 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.8  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   9.8  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  127 bits (307), Expect = 1e-30
 Identities = 60/107 (56%), Positives = 81/107 (75%), Gaps = 1/107 (0%)
 Frame = +1

Query: 1   NLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKE 177
           N NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL  E+D K+I+RA KK+
Sbjct: 6   NFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKD 62

Query: 178 FACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           FACNGT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 63  FACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 70  VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 246
           V ++  +R  RK +TTVQGL +   + KK  +    +FA   +V +  +  + + +QGD 
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158

Query: 247 RENICQWLTKSGLVKPE 297
             +I  ++ +     PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 QSNEIVNIPNSLFLFLYDIVFLNCCN 628
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 QSNEIVNIPNSLFLFLYDIVFLNCCN 628
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 QSNEIVNIPNSLFLFLYDIVFLNCCN 628
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 551 QSNEIVNIPNSLFLFLYDIVFLNCCN 628
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 575 PNSLFLFLYDIVFLNCCNNSINK*HVFV 658
           PN+L LF    + L  CN+SI    +FV
Sbjct: 182 PNALLLFFPSYLILRKCNSSIKFRQIFV 209


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 657 TKTCYLLIELLQQFKN-TMSYKNKNKLLGI 571
           T  CY ++EL+Q+F   T S     KLL I
Sbjct: 285 TDLCYTIVELMQEFSTITSSPLLDQKLLSI 314


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 348 GHVMF*QGGLETVHLELFRLH*AGFGEP 265
           GH M    G  TV L+L ++H  GF +P
Sbjct: 268 GHKMVMSIGGSTVDLDLVQIHPTGFVDP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,542
Number of Sequences: 5004
Number of extensions: 53046
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)