Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31356
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   3.4  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           29   3.4  
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)                 29   4.5  
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    28   7.9  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  138 bits (335), Expect = 3e-33
 Identities = 65/103 (63%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
 Frame = +1

Query: 19  PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 189
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541

Query: 190 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+KVHGF
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 290 FTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVV 111
           +TK +L  H +I +   P  C   PY  C     +  N  +HART     +++ERP    
Sbjct: 583 YTKTELRQHVRIHTGEKPYKC---PY--CDKAFAVKGNCTVHART-----HTKERPYKCT 632

Query: 110 SVLRPFRC 87
           +  R F C
Sbjct: 633 NCGRAFSC 640


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 220  EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 360
            +VL+    QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 636  IELLQQFKNTMSYKNKNKLLGIFTISFD*LFCNL*DETAAIIYKIYNILYNRG 478
            +E LQ  K+  S +   K L + T+ F+ LFC    ET A++ + +N+ +  G
Sbjct: 1155 LEYLQVSKDCPSTE---KALRMATLQFNSLFCIANQETLAVLAQFFNVAFPSG 1204


>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
          Length = 446

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 554 SNEIVNIPNSLFLFLYDIVFLNCCNNSI 637
           +N+I  IPN LF+ L D+++L+  +N +
Sbjct: 69  NNKISVIPNQLFINLIDLIYLDLSDNCL 96


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -1

Query: 203 STTVPLHA---NSFLHART--IFFRSYSEERPCTVVSVLRPFRC 87
           STTV +H    N+ LH R   I+ R+Y+ + P   +S   P RC
Sbjct: 254 STTVAVHKDARNADLHTRVTLIYRRAYNADLPTRTMSEGAPMRC 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,680
Number of Sequences: 59808
Number of extensions: 421385
Number of successful extensions: 2450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2450
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)