Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31356
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   130   1e-30
AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    29   3.0  
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   3.9  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   3.9  
Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRN...    28   6.8  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  130 bits (313), Expect = 1e-30
 Identities = 58/100 (58%), Positives = 77/100 (77%), Gaps = 2/100 (2%)
 Frame = +1

Query: 25  ADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTV 198
           ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+  KK+ +CNGT+
Sbjct: 10  ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQYLKKKHSCNGTI 69

Query: 199 VEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 70  VEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 82  IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENIC 261
           ++Q+ G K L  V G+     L  ++     +  CN     +P Y  +  ++   +E+  
Sbjct: 31  VEQKTGVKRLHLVLGVVGLQALY-LIFGHSAQLVCNFMGFVYPAYMSIKAIESSNKEDDT 89

Query: 262 QWLT 273
           QWLT
Sbjct: 90  QWLT 93


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 545 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 640
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 545 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 640
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical
           protein F47B10.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 321 LETVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 217
           L+ + L L R H  G+GEPLA      L+AL++  LA
Sbjct: 199 LKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 188  LHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 63
            L  +SF+ A T+F RS  E+RP  V  + +    +  + ++P
Sbjct: 1417 LDKDSFIQAITVFIRSLVEQRPAWVSPLAKTMEEYANSESEP 1458


>AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 4   LNTFDP-FADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR--ACKK 174
           + T DP   +A++     +QD   ++     +G  ++T    +  E  +KKIV   A K 
Sbjct: 79  IRTTDPAHLEAVQHFWMKIQDN-GYIYKSTYSGYYSITDECFIPEEDVVKKIVEGGAEKL 137

Query: 175 EFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 288
               NGT VE  E    +    + RE + +W+ +  +V
Sbjct: 138 TLKSNGTPVEWIEEENYMFRLSEFREKVAEWINRENIV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,502
Number of Sequences: 27780
Number of extensions: 308792
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)