Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31356
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54290.1 68414.m06189 eukaryotic translation initiation facto...   129   1e-30
At4g27130.1 68417.m03899 eukaryotic translation initiation facto...   129   2e-30
At5g54760.1 68418.m06820 eukaryotic translation initiation facto...   128   2e-30
At5g54940.2 68418.m06843 eukaryotic translation initiation facto...   122   2e-28
At5g54940.1 68418.m06842 eukaryotic translation initiation facto...   122   2e-28
At5g11900.1 68418.m01392 eukaryotic translation initiation facto...    35   0.042
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    30   1.2  
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera...    30   1.2  
At2g15345.1 68415.m01755 expressed protein                             30   1.6  
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote...    28   6.4  
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa...    27   8.5  

>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
           SUI1, putative similar to P|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score =  129 bits (312), Expect = 1e-30
 Identities = 58/102 (56%), Positives = 74/102 (72%)
 Frame = +1

Query: 13  FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 192
           FDPFADA            VH+R+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNG
Sbjct: 12  FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNG 71

Query: 193 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           TVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 72  TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/102 (56%), Positives = 74/102 (72%)
 Frame = +1

Query: 13  FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 192
           FDPFADA            VH+R+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNG
Sbjct: 12  FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71

Query: 193 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           TVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 72  TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 113

 Score =  128 bits (310), Expect = 2e-30
 Identities = 58/102 (56%), Positives = 74/102 (72%)
 Frame = +1

Query: 13  FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 192
           FDPFADA            VH+R+QQRNGRK+LTTVQGL  EY   KI++  KKEF CNG
Sbjct: 12  FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71

Query: 193 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           TVV+  E G+V+QLQGDQR+N+  +L ++GLVK + +K+HGF
Sbjct: 72  TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113


>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score =  122 bits (294), Expect = 2e-28
 Identities = 51/104 (49%), Positives = 78/104 (75%)
 Frame = +1

Query: 7   NTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 186
           + +DPFA+A  S     ++  +H+RIQQRNG+K+LTTVQGL  EY  ++I++  KK+F C
Sbjct: 10  SAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFCC 68

Query: 187 NGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           NG VV+  E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 69  NGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112


>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
           SUI1, putative similar to SP|P32911 Protein translation
           factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 112

 Score =  122 bits (294), Expect = 2e-28
 Identities = 51/104 (49%), Positives = 78/104 (75%)
 Frame = +1

Query: 7   NTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 186
           + +DPFA+A  S     ++  +H+RIQQRNG+K+LTTVQGL  EY  ++I++  KK+F C
Sbjct: 10  SAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDLKKDFCC 68

Query: 187 NGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 318
           NG VV+  E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 69  NGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112


>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
           SUI1 family protein similar to SP|O43583
           Density-regulated protein (DRP1 protein) (Smooth muscle
           cell associated protein-3) {Homo sapiens}; contains Pfam
           profile PF01253: Translation initiation factor SUI1
          Length = 198

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 91  RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 267
           RN RK +T V+GL      L    +   K+FA   +VV+ P   E + +QGD   +I ++
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEF 173

Query: 268 LTKSGLVKPEQ 300
           +T +    PE+
Sbjct: 174 ITDTWPDVPER 184


>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 206 CSTTVP-LHANSFLHARTIFFRSYSEERP---CTVVSVL 102
           CS ++P L ANSFLH   I+ R      P   CT+VSVL
Sbjct: 150 CSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVL 188


>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 16  DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 114
           D F D + S+ DDVQ+ LVH    +RNG K L+
Sbjct: 65  DGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94


>At2g15345.1 68415.m01755 expressed protein
          Length = 121

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +1

Query: 64  GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 204
           GLV++  QQ  R G K L  ++GL  +  Y  LKK  R+C KE+  +   +E
Sbjct: 3   GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54


>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069
           Eukaryotic protein kinase domain, PF00560 Leucine Rich
           Repeat; contains 1 predicted transmembrane domain
          Length = 664

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 142 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENI 258
           ++    R    E+A NGT+ EH  YGE   +   +R  I
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKI 467


>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 343

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 465 VPCDFLCCIKYCKSYILSPP 524
           VPC  +CC   C S++ S P
Sbjct: 309 VPCGHMCCCTACSSHLTSCP 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,901,731
Number of Sequences: 28952
Number of extensions: 278301
Number of successful extensions: 701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)