Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31355
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          28   6.0  
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)           28   7.9  
SB_18057| Best HMM Match : Ribonuc_L-PSP (HMM E-Value=2.9)             28   7.9  

>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 395  TKESRTETASKLSSTVRTRSVSIDEADN 478
            TKE+  ET++KLS T + RS  + E D+
Sbjct: 3164 TKENLEETSTKLSETEKLRSSEVSERDS 3191


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 407 RTETASKLSSTVRTRSVSIDEADNQFHVY 493
           R  TA +L ST+ T S S+ +AD    +Y
Sbjct: 556 RHSTAKRLGSTITTSSQSVSQADGSSQLY 584


>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
          Length = 788

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 392 VTKESRTETASKLSSTVRTRSVSIDEADNQFHVYSLSLWSLVVRMFDI 535
           + +E  +E  +KL    R  S S+DE  +Q H       +LV R+ D+
Sbjct: 468 IQRERDSEALAKLREENRNLSKSVDELSSQVHQLEAKNNALVSRVSDL 515


>SB_18057| Best HMM Match : Ribonuc_L-PSP (HMM E-Value=2.9)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 407 RTETASKLSSTVRTRSVSIDEAD--NQFHV 490
           R  TA +L ST+ T S S+ +AD  +Q HV
Sbjct: 33  RHSTAKRLGSTITTSSQSVSQADGSSQLHV 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,516,153
Number of Sequences: 59808
Number of extensions: 315049
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)