Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31355
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10770.1 68414.m01233 invertase/pectin methylesterase inhibit...    28   4.9  
At5g58100.1 68418.m07270 expressed protein                             27   8.5  

>At1g10770.1 68414.m01233 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 167

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 548 ALDNLCRTFVQPVTRERESTHETDYPLHLWTRIS 447
           A  +LCR  V+ VT  R++TH T   L   T+++
Sbjct: 42  AYPSLCRPLVKRVTSPRKATHRTIQALEAKTKLA 75


>At5g58100.1 68418.m07270 expressed protein 
          Length = 945

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 620 SYFMTRCDESLR--NDGIFYGLLVTYALDNLCRTFVQPVTRERESTHETDYPLHLWTRIS 447
           SY +T  +ES++  N GI    L+     N  +TF    +RERE  ++  Y + LW R+S
Sbjct: 810 SYMITALEESIQAVNSGIH---LLRLERTNK-KTFKLFQSRERELMNKYKYVVSLWRRLS 865


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,465
Number of Sequences: 28952
Number of extensions: 211915
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)