Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31354
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 31 0.15
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 31 0.19
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 28 1.4
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 2.4
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 5.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.3
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.6
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.6
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 9.6
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/65 (21%), Positives = 33/65 (50%)
Frame = +1
Query: 151 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQFNSPINL 330
P P ++ + PNP+ P + + +D K K+ + L++ +G+ ++ + P +
Sbjct: 607 PAPLQNVYLYSPNPSALPPSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD-TPPEEV 665
Query: 331 YSEQN 345
+SE +
Sbjct: 666 FSESD 670
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 30.7 bits (66), Expect = 0.19
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 311 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALML 490
S S+ T + L L+ S+L QL I L RGK S +D L+L
Sbjct: 428 SDFLSVMTIHIHLLYLASSRLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLL 487
Query: 491 LSIYYAIFRF-LQTIYLFHAKLSVS 562
+I + + F L TIY+F+A +++
Sbjct: 488 GTILFTVLIFFLPTIYVFYAAFALT 512
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 239 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRN 340
+ RW RCC E R L C S T QS N
Sbjct: 342 SSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 172 LRHHPNPAMRAPPNHDY-RDTLMKQKVAESVLQRVVGEEAPKVLHKQ 309
L HP+ ++ N+ + LMKQK+ E V+ +EA ++L +
Sbjct: 476 LNMHPHDELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDE 522
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 IPTSVTMSLNPNFFPN-GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRH 180
IP SV S NF Q+P + S P P+ +V ++P P + +
Sbjct: 159 IPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218
Query: 181 HPNPAMRAPP 210
+ NP+ + P
Sbjct: 219 YYNPSATSKP 228
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 254 SRCCSEWLAKRHL 292
SRCC+ WL+ HL
Sbjct: 2269 SRCCTMWLSNSHL 2281
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.6
Identities = 23/85 (27%), Positives = 31/85 (36%)
Frame = -3
Query: 255 LCHLLFHKGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFFF 76
L HL + + + RCP V V+ L + L S G + A NF
Sbjct: 77 LSHLSLCQNLIEFLTARCPRLVV-VLPWTVL---QELDGLKSESSSTCGYLARQAHNFLL 132
Query: 75 RMFRILVSVREEVGVERHCYTCRYG 1
+ FR VS V HC + G
Sbjct: 133 QCFRSNVSSLRGQKVHEHCSSTEKG 157
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 100 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNH 216
P PL P ++ R+P P S P+ APP H
Sbjct: 44 PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTH 82
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/89 (19%), Positives = 41/89 (46%)
Frame = +1
Query: 124 LPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLH 303
L ++++ +E+YL+ + P P + R+ + ++ + L + + +
Sbjct: 52 LQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRL--NPLAPIGARQPNPSIP 109
Query: 304 KQFNSPINLYSEQNIANSIRQQTSPLPTN 390
+QF+ PIN + ++ + TSP+ N
Sbjct: 110 QQFSKPINESGTGTMGPAVGELTSPVMKN 138
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 135 SSREHERSGAVRPVADN-FFFRMFRILVSVREEVGVE 28
+S + RS ++P ADN FR+ R ++S EE+ ++
Sbjct: 980 ASTDESRSVLIKPKADNVILFRLKRFIMS-SEEINLD 1015
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,384
Number of Sequences: 5004
Number of extensions: 57241
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -