Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31354
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 34 0.087
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 31 0.61
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 31 0.81
12_01_0111 - 857627-857975,858123-858334,858428-858550,858662-85... 29 2.5
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 2.5
09_01_0037 - 604001-604957 29 3.3
02_04_0293 + 21644415-21644533,21644686-21645118 29 3.3
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 28 5.7
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 28 5.7
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 5.7
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 5.7
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 28 7.5
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 7.5
04_04_0347 + 24564589-24565296 28 7.5
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 7.5
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 27 9.9
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 9.9
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 25 SLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNP 192
S +P+ FP Q P P+ + NWP P + PGA PGP + P P
Sbjct: 244 SPSPSSFPLKQQQPPPPQ---LFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRPMP 296
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 271 VVGEEAPKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTN 390
V G++ PK L+ F L + +NI S++ SP PTN
Sbjct: 746 VTGKDCPKGLYGTFCKACPLGTYKNITGSLKSLCSPCPTN 785
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 52 GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDY 222
GY P+ PY P P ++P + H+ P + PPNHDY
Sbjct: 778 GYSQPEQRPAYSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQPPHQQPPNHDY 834
>12_01_0111 -
857627-857975,858123-858334,858428-858550,858662-858856,
859259-859498
Length = 372
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +1
Query: 61 DPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMK 240
DP H E + + +TP +LP ++R+H P + H Y DT +
Sbjct: 200 DPVHLLEIGIEGFYGLSTPELLPVNPDEYSGHAGTDFIRNHQAPGIDLASIHVYSDTWLP 259
Query: 241 QKVAESVLQRV 273
+ E+ LQ V
Sbjct: 260 HSIKENHLQFV 270
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 115 PLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 210
P PG R PGP + P+P R+PP
Sbjct: 50 PSQAPGPAARHAPGPARHHGAPAPHPGRRSPP 81
>09_01_0037 - 604001-604957
Length = 318
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 10 TSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAK-VRREPGPTESYLRHHP 186
TS+++SL+ + + DP P E V P + + P VR+EP L+ P
Sbjct: 202 TSLSLSLSLPGLDHPHPDPSTPSEPAVQLQPPPPSQMPPPTPSCVRQEPPQMPFQLQPPP 261
Query: 187 NPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEA 288
P AP + ++ +M++ + V + G A
Sbjct: 262 PPRPSAPFSAEFL-AMMQEMIRIEVRNYMSGSAA 294
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 291 RCLFANHSLQHRLCHLLFHKGITVVVVRRCPHC 193
RC +H LQHR C L+ + V RRC C
Sbjct: 29 RCGHCHHRLQHRYCSELYPR---VAAYRRCNWC 58
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = +1
Query: 151 PGPTESYLRH-HPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ-FNSPI 324
P P +Y+ H PNP + + P V S + G P + Q FN P
Sbjct: 136 PNPQPAYMSHPKPNPHVFSSP--------CSPVVFNSPSNHLAGSTTPTPNNLQVFNGPR 187
Query: 325 NLYSEQNIANSIRQQTSPLPTN 390
N + + +N + T+P P N
Sbjct: 188 NPHVSNSPSNHLAGSTTPTPNN 209
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +1
Query: 547 QAICVFLRA*TRRRSLAEDLEPAPQTR*NNEC 642
+A C LR TRR SLA D PAP NN C
Sbjct: 275 EAECRKLRHLTRRTSLANDSRPAP----NNAC 302
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 109 TTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 210
T PL +P P T + L +PNP+ PP
Sbjct: 25 TPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPP 58
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 249
E G E +R H PA RAP D YR ++ +KV
Sbjct: 190 EMGIEEDIIRKHTTPAYRAPEMWDLYRREVISEKV 224
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 249
E G E +R H PA RAP D YR ++ +KV
Sbjct: 192 EMGIEEDNIRKHTTPAYRAPEMWDLYRREVISEKV 226
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 201 PHCWVGVMTQVTLCGARLPSDLS 133
P+C GV T VT+ GA+ PS+ S
Sbjct: 198 PYCRNGVRTSVTVSGAQYPSNSS 220
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +1
Query: 73 PEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHD 219
P V+ P P + V+ P PT RH P +PP+ D
Sbjct: 141 PAPAVIHGTNSHLAPAPAPSSHVQYSPAPTPGDGRHQSPPPPPSPPSAD 189
>02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 240 FH--KGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERS 112
FH KGIT V +RRCP+ +T++++ G P +S H+ S
Sbjct: 1090 FHNLKGITWVNLRRCPN-----LTRISIDGFSQPHVMSKPVHDNS 1129
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 151 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV 261
P P L+ HP P + PN D ++ + K V +
Sbjct: 265 PPPPPPILQEHPQPVVAVVPNVDEQEVVAKPAVIAKI 301
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 365 SKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALMLLS 496
S+LRL +T T RT++ K F + +THI +D +L++
Sbjct: 804 SQLRLSAITLQTGLRTMAALKEFMFRKQNKATTHIQMDIKLLVT 847
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,579,126
Number of Sequences: 37544
Number of extensions: 423357
Number of successful extensions: 1349
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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