Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31353
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    90   3e-19
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    54   2e-08
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    38   9e-04
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    30   0.30 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   3.7  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   8.7  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    25   8.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   8.7  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 40/93 (43%), Positives = 60/93 (64%)
 Frame = +1

Query: 160 FGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDV 339
           +GS ++ + +++ A  ++QGSGW WL  +K    L+I T  NQD +  +    P+ GID 
Sbjct: 127 WGSLEDFQKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDA 182

Query: 340 WEHAYYLQYKNVRADYVKAIFDVANWNDISQRY 438
           WEHAYY QY+N +A+Y KAI++V NW +   RY
Sbjct: 183 WEHAYYPQYENRKAEYFKAIWNVINWKEAESRY 215


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
 Frame = +1

Query: 160 FGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD---------PLQATTG 312
           FGS+  LK+Q+     +V G GW WL Y+ +     +    N           P   T  
Sbjct: 110 FGSFGELKSQMVDVGNSVFGDGWLWLVYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNA 169

Query: 313 LVPLFGIDVWEHAYYLQY-KNVRADYVKAIFDVANWNDISQRYE 441
           +VPL  +++W++AY   Y  N +  Y+   +D+ NW  ++ R++
Sbjct: 170 IVPLLCVNLWQYAYLDDYGLNGKKMYITKWWDMINWTVVNNRFQ 213


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +1

Query: 184 NQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQ 363
           N+L+       GS + W  +      L I++  +          VP+  + +W HAYY  
Sbjct: 179 NRLNLLRTFQAGSPYLWTRWQSNDPHL-ISSVPDYSARPRKYAHVPILNLCLWNHAYYKD 237

Query: 364 YKNV-RADYVKAIFDVANWNDISQRYEKAL 450
           Y  + R+ Y+   FD  +W+ I +R   +L
Sbjct: 238 YGLLNRSRYIDTWFDCIDWSVIEERLTNSL 267


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 453 LERFFISLRYIIPVGYIENSFHVVGTNVFVLKIVRVLPYIDSEERDQSSGGLQRIL 286
           + R+ + L  II +       H    +V ++K +  +P +D+EER +   GLQ I+
Sbjct: 388 IPRYSLFLDQIILLTQEGECQHTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 280  QNQDPLQATTGLVPLFGIDVW 342
            ++ DPL+AT+  +PLF +  W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 253  FVCCSQANPSLSPVLPQKLSTVDSLSYPRIQSLSMIQSFV 134
            F CCS     +   LP+ +S   + + PR  +L ++Q+F+
Sbjct: 1946 FSCCSHFIVPMVNALPKLVSFSSASTEPRKLALDIVQTFI 1985


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 299 RPPLDWSRSSESMYGSTR 352
           +PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 247 KQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANW 417
           KQ++   +      DP QA+  +V + GI       YL+  N   D +   + V  W
Sbjct: 398 KQLENQDLIDLLTDDPTQASVHMVTMMGIHPNSLLDYLEQYNSSFDKIIG-YKVTGW 453


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 453 LERFFISLRYIIPVGYIENSFHVVGTNVFVLKIVRVLP 340
           +  +F  +   +P+G I   F     +VF+L ++ ++P
Sbjct: 58  MSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIP 95


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 298 QATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDIS 429
           QA   +   +G  V+  A Y Q +N   D++  + D   W+ I+
Sbjct: 69  QAPIDVAVGYGSGVFRQAGYSQKENPMIDFIFQVEDPVKWHKIN 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,741
Number of Sequences: 5004
Number of extensions: 50830
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)