Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31353
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 117 6e-27
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 62 4e-10
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 40 0.002
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133... 30 1.2
06_02_0151 - 12299935-12300189,12300713-12300986,12301072-123013... 30 1.2
04_03_0117 - 11461460-11462755 29 2.9
12_01_0485 - 3848721-3849227,3852019-3852369 29 3.8
01_06_0583 + 30400317-30401681 29 3.8
02_05_0755 - 31519765-31519896,31520073-31520135,31520236-315203... 28 5.0
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356... 28 6.7
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 6.7
05_06_0174 - 26149663-26149885,26150353-26151701 27 8.8
04_03_0115 - 11428116-11429594 27 8.8
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 27 8.8
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 117 bits (282), Expect = 6e-27
Identities = 54/98 (55%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Frame = +1
Query: 157 DFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQAT-TGLVPLFGI 333
DFGS++ L ++S A+QGSGW WL +K+ KKL + T NQDPL LVPL GI
Sbjct: 156 DFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPLLGI 215
Query: 334 DVWEHAYYLQYKNVRADYVKAIFDVANWNDISQRYEKA 447
DVWEHAYYLQYKNVR DY+ I+ V NW + YE A
Sbjct: 216 DVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 61.7 bits (143), Expect = 4e-10
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Frame = +1
Query: 157 DFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQ---------------- 288
DFGS+ N + + +++++ GSGW WL ++ +K + QN
Sbjct: 170 DFGSFTNFREEFIRSALSLLGSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSI 229
Query: 289 ---DPLQATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFD-VANWNDISQRYEKA 447
D + L PL +D+WEHAYYL YK+ R YV D + +W+ ++ R +A
Sbjct: 230 NLCDDIPCPLLLQPLINLDLWEHAYYLDYKDDRRMYVTNFIDHLVSWDTVTLRMMRA 286
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +1
Query: 157 DFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATT-GLVPLFGI 333
DFGS+D + Q A+ GSGW WL Y K ++ +++ P+ + G + +
Sbjct: 228 DFGSYDGMIRQFMDAASTQFGSGWVWLCY----KTSKLPHVKSRSPIPSDNYGRLVISKS 283
Query: 334 DVWEHAYYLQYKNVRADYVKAIFD-VANWNDISQRYEKALK*IISR 468
+ + + R+DYV + + +W + R +KA++ + R
Sbjct: 284 PNAINPLVWGHSDRRSDYVSTFLEKLVSWETVESRLKKAVQRAVER 329
>12_02_0659 -
21612325-21612328,21613164-21613199,21613279-21613394,
21613983-21614567
Length = 246
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 348 VLPYIDSEERDQSSGGLQRILVLACSYLQFLH 253
+ PY + EE D +SG ++ VL C +LQF H
Sbjct: 53 IFPYYEHEEIDSASGEKKK--VLPCYFLQFQH 82
>06_02_0151 -
12299935-12300189,12300713-12300986,12301072-12301378,
12301467-12301714,12303181-12303480,12303564-12303620,
12304831-12304940,12305053-12305382
Length = 626
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 108 NFFRHHVNVTKDWIIDRLWILG*LKESTVDSFCGSTGLRLGLAWLQQTNEEIANSYMPEP 287
NFFR NV D I +L LK + +D G ++W+Q EE+ +S +P+
Sbjct: 494 NFFRLLSNVKADHNIPEKELLVPLKAALLD--IGPERKEAWISWVQTYIEELVSSGVPDE 551
Query: 288 GSSAGHHWIGP--ALRN 332
A + + P LRN
Sbjct: 552 ERKAAMNSVNPKYVLRN 568
>04_03_0117 - 11461460-11462755
Length = 431
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 433 SEIYHSSWLHRK*LSRSRHERFCTEDSTRAPIHR 332
S +YHS W H L + FC D +HR
Sbjct: 158 SVVYHSLWNHLPHLRAPGDDAFCLPDHPEVTVHR 191
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 AWLQQTNEEIANSYMPEPGSSAGHH-WIGPALR 329
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>01_06_0583 + 30400317-30401681
Length = 454
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 238 QANPSLSPVLPQKLSTVDSLSYPRIQSLSMIQ 143
+ANPSLS V+P +L+T+ SL I +I+
Sbjct: 140 RANPSLSGVMPPQLATLRSLQVLTISQNGLIR 171
>02_05_0755 -
31519765-31519896,31520073-31520135,31520236-31520352,
31520553-31520642,31520897-31520984,31521462-31521531,
31521945-31522023,31523231-31523275,31523927-31524013,
31524101-31524184,31524304-31524483,31524562-31524702,
31524873-31524981,31525411-31525466,31525877-31525924,
31526021-31526159,31526710-31526817,31527138-31527164,
31527325-31527417,31527837-31527916,31528051-31528140,
31528286-31528376,31528503-31528591,31528756-31528794,
31530611-31530733
Length = 755
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +3
Query: 102 LLNFFRHHVNVTKDWIIDRLWILG*LKE----STVDSF 203
L++FFR H+NVTK + R+ IL L+E ++DSF
Sbjct: 641 LMDFFREHINVTK--VETRVRILADLRELASAESLDSF 676
>04_01_0266 -
3563075-3563109,3563405-3564754,3564862-3564965,
3564967-3565421
Length = 647
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +1
Query: 175 NLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDV-WEHA 351
+L+ ++T + GW G Q+ L Q + L + GID W+
Sbjct: 323 SLRRLITTMTAGYLNRSRGWSGTIGQLNLLSFRAAQINATDRCLRKLAMMLGIDEWWDST 382
Query: 352 YYLQYKNVRADYVKAIFDVANWNDIS 429
Y + V + + D+ + ND++
Sbjct: 383 CYSWIEEVPMEVKEGAVDMVSRNDLN 408
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 192 VDSFCGSTGLRLGLAWLQQTNEEIANSYM 278
VD GS GL+ + L QT EE+A +++
Sbjct: 2 VDKNDGSEGLKFNTSHLMQTTEEVARAFI 30
>05_06_0174 - 26149663-26149885,26150353-26151701
Length = 523
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 238 QANPSLSPVLPQKLSTVDSLSYPRIQSLSMIQSFV 134
++NPSLS LP +LS++ SL + ++I+ V
Sbjct: 147 RSNPSLSGTLPPQLSSIRSLQVLTVSQNALIRGEV 181
>04_03_0115 - 11428116-11429594
Length = 492
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 433 SEIYHSSWLHRK*LSRSRHERFCTEDSTRAPIHR 332
S ++HS W H L + FC D +HR
Sbjct: 158 SVVFHSLWNHLPHLRAPGDDAFCLPDHPEVTVHR 191
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 118 GIMLMSQRIGSLIDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKL 264
G++ + + +L NLK QL A G WG+LG K +++L
Sbjct: 188 GLIALLTAVDALSHLHDISNLKKQLVFA--VFNGEAWGYLGSRKFLQEL 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,205
Number of Sequences: 37544
Number of extensions: 314263
Number of successful extensions: 861
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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