Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31353
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_23784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   5.1  
SB_30258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
 Frame = +1

Query: 139 RIGSLID--FGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTG 312
           +IG LID   G++   K        ++ GSG+ WL  +     L I    NQ+   A   
Sbjct: 353 KIGDLIDKSHGNFSMFKQWFDEQVNSMFGSGYTWLCQDVTSGFLTILNMGNQESPVAYR- 411

Query: 313 LVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDISQRYE 441
           L P+  ID+WEHA+YL+++N R  YV + + + +W  +++  E
Sbjct: 412 LNPVLVIDLWEHAFYLKHQNKRPGYVHSWWHLVDWERVNELLE 454


>SB_23784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 364 TEDSTRAPIHRFRRAGPIQWWPAE 293
           T+D  + P+ RFR  GPIQ  P E
Sbjct: 36  TDDDFKPPLKRFRTPGPIQRIPGE 59


>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1342

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 147  IIDRLWILG*LKESTVDSFCGSTGLRLGLAWLQQTNEEIANSYMPEPGSSAG 302
            I+DRLW    L    +   C STG  +G+  +   +E IA   M + G+  G
Sbjct: 1110 IMDRLWKKDGLDLEMIPYGCLSTGDHVGMIEVVTNSETIAKIQMKQMGAITG 1161


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 345  ARVLSSVQKRSCRLRESYFRCSQLE*YISEI 437
            ARV S V++R   L  S F CS +E Y+ +I
Sbjct: 3054 ARVCSVVEQRIPALLNSSFLCSHIEDYVDDI 3084


>SB_30258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 YNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYY 357
           Y ++  +   A  +++   +  +GL+P F +D+W   Y+
Sbjct: 59  YTQKKSQTAAAVARSEIERRWPSGLIPSFSLDLWRSRYF 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,934
Number of Sequences: 59808
Number of extensions: 363194
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)