Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31351
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   3.4  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   4.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   4.5  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   6.0  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = -1

Query: 360 LNLFIW-----CQFAQTFFFIILDFKDKPYF*LSVVR 265
           L++ IW     C+FA+++FF+ L  +D P   LS +R
Sbjct: 685 LSVIIWVCVFTCKFAESYFFLTLSIRD-PIIVLSTMR 720


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 283  LIVCSAKK*YALKCNNNVTLKVYLHTKYY 197
            ++ CSA + YAL    N   K Y HT +Y
Sbjct: 4511 ILPCSAGQMYALNAWYNTEKKKYFHTFFY 4539


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 353 CLFGVNSHKPFFSLSWILRTNHISN 279
           C F VNS++P  S+ W  + N++ N
Sbjct: 468 CQFVVNSNQPKDSIMWKRKVNNVFN 492


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 91  RKLLNIFNYDDFLWNLCHSINKRKKECTKDKLLTRNNILCVNKL 222
           R ++ I NYD F WN+   ++  +K      ++ RN+ + V++L
Sbjct: 26  RPIVMIDNYDSFTWNVVQYLSNLEKR--YPIMVFRNDEITVDEL 67


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 305  SKIMKKKVCAN*HQINRFSGDASAFHLQLCKRCV*SLLS*SNPLKI 442
            SK  K+ +C +   I +F  D +    QLC +C+ S    +  L+I
Sbjct: 3266 SKFTKQNLCESASIIVQFITDLTVGEFQLCLKCLLSFSQHAASLRI 3311


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 118 DDFLWNLCHSINKRKKECTKDKLLTR 195
           DDF   L H+I++   +  KD++L R
Sbjct: 261 DDFTIALAHAISRHSGQVHKDRILNR 286



 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 289 WFVLKIQDNEKKGLCELT 342
           +F+L +Q+N+   LC LT
Sbjct: 489 FFILPVQNNDNSALCALT 506


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = -3

Query: 184 IYLW---CILFFVCLLNDIN 134
           IYLW   C+ FF+ LL+D+N
Sbjct: 869 IYLWQNKCLDFFLSLLSDLN 888


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 410 IRHIVYIIVSEMH*RLH*TCLFGVNSH 330
           I H++Y         LH TCL+G N H
Sbjct: 157 IPHLLYSFSVAAGITLHVTCLYGSNDH 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,963
Number of Sequences: 5004
Number of extensions: 37770
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)