Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31351
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)                 29   2.7  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     28   4.6  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 27   8.1  

>SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 103 NIFNYDDFLWNLCHSINKRKKECTKDKLLTRNNIL 207
           ++ NY D +  +  SI KR+ EC K+  L   +IL
Sbjct: 163 DLVNYPDRIDEILDSIKKRRDECVKELALLEKDIL 197


>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
          Length = 452

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 372 LASPLNLFIWCQFAQTF 322
           LASP+N F WCQ A  F
Sbjct: 312 LASPINYFSWCQRATAF 328


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 256 IIFSHYRQLEIWFVLKIQDNEKKGLCELTPNKQVQWRR*CISLTIM*TMC 405
           I   HY + EI   L   + EKKGL EL   ++ Q+ + C+ L I    C
Sbjct: 393 IAADHYAKDEISEKLTTLEEEKKGLLELWEKRKNQFEQ-CMELQIFIRDC 441


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 250 LKCNNNVTLKVYLHTKYYCA*VIYLWCILFFVCLLNDINSRENHHN*R--YLKVFYELRH 77
           ++ N  +  K +L   + C  ++Y   I +F+ ++N  +   N  N R   LK FY  R+
Sbjct: 447 IRLNGRLMAKYWLKITHVCLKIVYSRSIYYFI-VINTYSQSNNVLNRRKIVLKAFYSWRN 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,502
Number of Sequences: 59808
Number of extensions: 245408
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)