Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31351
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 339  DTK*TGSVETLVHFTYNYVN 398
            DTK T S ET++H    Y N
Sbjct: 1132 DTKITSSSETILHGLKKYTN 1151


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 286 FLIVCSAKK*YALKCNNNVTLKVYLHTKYY 197
           F IVC AK  Y+L+       +V    KY+
Sbjct: 12  FSIVCQAKAHYSLRDFKANIFQVKYQWKYF 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +1

Query: 148 INKRKKECTKDKLLTRNNILCVNKLLVLRYYYISKHIIFSHYRQLEIWF 294
           + +++   T+ + L        N+ L  R      H +    RQ++IWF
Sbjct: 8   VKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,075
Number of Sequences: 438
Number of extensions: 2272
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)