Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31351
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55090.1 68418.m06867 protein kinase family protein contains ...    30   0.94 
At1g26930.1 68414.m03283 kelch repeat-containing F-box family pr...    28   2.9  
At3g44770.1 68416.m04820 hypothetical protein contains Pfam prof...    27   5.0  
At3g26930.1 68416.m03369 hypothetical protein                          27   6.6  
At1g60400.1 68414.m06800 F-box family protein contains F-box dom...    27   6.6  
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    27   8.8  
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    27   8.8  
At1g45243.1 68414.m05188 DC1 domain-containing protein contains ...    27   8.8  

>At5g55090.1 68418.m06867 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 448

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 235 YYYISKHIIFSHYRQLEIWFVLKIQDNEKK 324
           YY I    I  +Y  LE  FVLK  DN KK
Sbjct: 401 YYNIFDEDIILYYDHLEDCFVLKFDDNNKK 430


>At1g26930.1 68414.m03283 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 421

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 IFNYDDFLWNLCHSINKRKKECT 174
           ++NY+D  W +   +NKR+K C+
Sbjct: 232 LYNYEDQTWLVLPGMNKRRKMCS 254


>At3g44770.1 68416.m04820 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 505

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 340 SIRTNL-FFHYLGF*GQTIFLIVCSAKK*YALKCNNNVTLK-VYLHTKYYCA 191
           SIR N    HY    G  IFL+VCS  + + L CN    L+ +   T+  CA
Sbjct: 19  SIRWNWRHLHYRVPLGLGIFLMVCSPPRLFLLNCNVQGFLRGIQATTRENCA 70


>At3g26930.1 68416.m03369 hypothetical protein
          Length = 409

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 106 IFNYDDFLWNLCHSINKRKKECTKDKLLTRNNI 204
           +FN + F+W  C  I + +KE  K  L   N +
Sbjct: 323 LFNLETFIWKGCKRIGEDEKEVAKYILRNTNRL 355


>At1g60400.1 68414.m06800 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 LNIFNYDDFLWNLCHSINKRKKECTKDKLLTRNNILCVNKLLV 228
           +N+  YDDFLW +   + +R   C    L+  NN   VN+ LV
Sbjct: 94  VNVLWYDDFLWMIDDVVKRR--VC---DLMVTNNPYVVNEKLV 131


>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 88  HRKLLNIFNYDDFLW---NLCHSINKRKKECTKDKLLTRNNILC 210
           + K L I NYD  L    NLC   ++R+K   +D+  T  ++LC
Sbjct: 559 YAKKLQILNYDAALIDAKNLCILEDERRKNVPEDQWNTYASLLC 602


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 88  HRKLLNIFNYDDFLW---NLCHSINKRKKECTKDKLLTRNNILC 210
           + K L I NYD  L    NLC   ++R+K   +D+  T  ++LC
Sbjct: 559 YAKKLQILNYDAALIDAKNLCILEDERRKNVPEDQWNTYASLLC 602


>At1g45243.1 68414.m05188 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 263

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 299 RTNHISNCL*CEKIICFE 246
           RTN   NCL C+  +CFE
Sbjct: 122 RTNETFNCLECDFSLCFE 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,966,029
Number of Sequences: 28952
Number of extensions: 170389
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)