Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31349
(321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.019
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.043
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 30 0.075
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 29 0.13
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 28 0.30
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 28 0.40
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 27 0.70
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 0.70
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.93
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 0.93
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 1.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 1.6
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 2.8
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 25 3.8
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 3.8
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 3.8
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 24 5.0
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 24 5.0
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 24 6.6
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 23 8.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 23 8.7
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.3 bits (70), Expect = 0.019
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = -3
Query: 265 QHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKER---AQYFSEVNDLRAGLDHLSN 95
Q L L K+ E + D+L L+ K++K+ A + ++ + L+ L+N
Sbjct: 1092 QRNVELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKEKSDALEQLTN 1151
Query: 94 EKAAQEKIVKQLQHQLNE---VQSKADEANR 11
EK E IV Q N V+ ++D ANR
Sbjct: 1152 EK--NELIVSLEQSNSNNEALVEERSDLANR 1180
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = -3
Query: 199 QLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKADE 20
+L ++N + K+ + DLRA L+ SNE + ++ + +LN ++ + E
Sbjct: 442 KLAEINSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKE 501
Query: 19 ANR 11
+
Sbjct: 502 QKK 504
Score = 23.4 bits (48), Expect = 8.7
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = -3
Query: 232 KHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQH 53
K A+ + +Q +LN L+ + ++++ S + L++ + NEK E QL
Sbjct: 479 KEKSALIDKKDQ--ELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNE 536
Query: 52 QLNEVQSKADEANRSRS 2
E+Q++ + S
Sbjct: 537 LKGELQTEISNSEHLSS 553
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.043
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = -3
Query: 250 LANLRKKHNDAVSEMGEQLDQL-------NKLKAKAEKERAQYFSEVNDLRAGLDHLSNE 92
L+NL+++HND + + ++L + + LK++ E+ QY + LR D L N
Sbjct: 724 LSNLKERHNDELDSLNKKLREFEGILSSNSSLKSEIEERNNQYVT----LRENFDSLQN- 778
Query: 91 KAAQEKIVKQLQH 53
A E KQ+ H
Sbjct: 779 -AIMETFDKQVTH 790
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 30.3 bits (65), Expect = 0.075
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = -3
Query: 226 NDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQHQL 47
++ V + ++++QLN + K E ++A S+ L + + K+ Q+K +
Sbjct: 19 DEEVQRISDKVNQLNTSENKNEDQKATNLSD--RLGPKITENVDAKSEQDKATNTIAEDA 76
Query: 46 NEVQSKADEAN 14
N QS+ DE+N
Sbjct: 77 NTKQSENDESN 87
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 29.5 bits (63), Expect = 0.13
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -3
Query: 253 TLANLRKKH-NDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLD-HLSNEKAAQ 80
T A LR K ++ + QL ++N+ E+ER YF+++ ++ + HL+ +
Sbjct: 168 TAAVLRAKQAQQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSM 227
Query: 79 EKIVKQLQ 56
E +++++Q
Sbjct: 228 ENMLERIQ 235
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 0.30
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 253 TLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLD 107
++ +R K + S + + + LNK K +K+ A+Y N L+ ++
Sbjct: 89 SITQMRTKFDKTKSWLSSKRNTLNKSKESLQKDEAEYVELANSLKTKVE 137
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.9 bits (59), Expect = 0.40
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -3
Query: 238 RKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQL 59
RKK + +E QL ++N+ + KAEK Q + + L+ E+A E+ +
Sbjct: 35 RKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSF 94
Query: 58 QHQLN 44
Q +L+
Sbjct: 95 QEKLD 99
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 0.70
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 199 AHPSRRRHRCASCGGWRGWLRAGCWPPRGGARYPIR 306
AHP++ ++RC G RG RA G AR+P R
Sbjct: 59 AHPTKIKNRCIETGRGRGVFRA-----FGLARFPFR 89
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 0.70
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 280 EEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHL 101
EEA+ +++ +L K+ E EQL K K EKE + S+ DL+ GL L
Sbjct: 87 EEADKIYQSVEEHLSKRRKSQ-REKQEQLQ-----KEKYEKENPKVSSQFADLKRGLSTL 140
Query: 100 SNE 92
++E
Sbjct: 141 TDE 143
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 0.93
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = -3
Query: 286 PLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLD 107
P+EEAN ++E+ A ++ S Q Q + E + +E+N + +
Sbjct: 69 PIEEANEENESVAATSNERQQHDASNQPSQAAQ-TTINKNTESATPKTVNEINKSQEFQE 127
Query: 106 HLSNEK 89
H+ K
Sbjct: 128 HVETPK 133
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 0.93
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 289 PPLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLK 173
PP+EE N+ +A N KH+ +E+ EQ + + +K
Sbjct: 292 PPIEEKNLPDDAWYCN-ECKHHSLYNELDEQEELESNVK 329
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 1.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 193 DQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKAD 23
D L K A K+ A ++ + L NEK EK+++Q Q++ N+ + K +
Sbjct: 43 DSLQKSFLDALKQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVE 99
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 217 VSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQL 59
VSE G+ D K+ E+ +S+ N++ D LSN + + V L
Sbjct: 1026 VSERGDYDDNAKKVDEVISIEKVDGYSKENNVPLSEDDLSNSSESSNESVYSL 1078
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 296 YRAPPRGGQHPARSHPR-QPPQEAQRCRL 213
YR PPR G+H R+HP P Q R L
Sbjct: 369 YR-PPRKGKHNDRAHPPIHPVQMVHRSAL 396
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 3.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 228 CFLRR-LARVASCWMLASSRGGPVPNSPYSE 317
CFL+ LARV +L S RG + N P E
Sbjct: 59 CFLKENLARVLVHDLLMSKRGLSISNGPIKE 89
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 3.8
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -3
Query: 259 EATLANLRK-KHNDAVSEMGEQL-DQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKA 86
E L L K +H + ++L DQ+ K K E + Q ++++ + L+H + +
Sbjct: 296 EECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRN 355
Query: 85 AQEKIVKQLQHQLNE 41
+ + KQ + E
Sbjct: 356 QKLEAAKQRMDNIRE 370
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 24.6 bits (51), Expect = 3.8
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = -3
Query: 235 KKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHL-SNEKAAQEKIVKQL 59
+K N+++ L++ +L K +E ++ DLR LD+ SN K +E++
Sbjct: 634 EKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLR 693
Query: 58 QHQLNEVQSKADEANR 11
+ +E++ +E ++
Sbjct: 694 EGHESEIKDFIEEHSK 709
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.2 bits (50), Expect = 5.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 283 LEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKE 155
L E ++HE + L + HN +M E L++ L EKE
Sbjct: 286 LLEKQLKHEESQVELLRTHN---RQMTETLEKYKSLDFNMEKE 325
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 24.2 bits (50), Expect = 5.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 145 YFSEVNDLRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSK 29
Y E N + LSN + Q K V++ Q Q NE+ K
Sbjct: 212 YHPEANQIIKRALLLSNGLSVQPKSVEESQIQFNELAQK 250
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 150 LNTLAKSMTSVPVSTTCPTK 91
L++ K++ S P+ST+ PTK
Sbjct: 843 LSSYLKTLESTPMSTSSPTK 862
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 67 KQLQHQLNEVQSK 29
K+LQ QLNE+Q K
Sbjct: 17 KRLQRQLNEIQEK 29
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 23.4 bits (48), Expect = 8.7
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 283 LEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKA---KAEKERAQYFSEVNDLRAG 113
L+E++ + + L+++ A+ + + + +K+ K E E +EV D+R
Sbjct: 225 LKESDSFKDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNF 284
Query: 112 LDHLSNEKAAQEKIVKQLQH 53
+ L E A E ++Q+
Sbjct: 285 VQQLEQELYAFEDDYSRIQN 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,236
Number of Sequences: 5004
Number of extensions: 11951
Number of successful extensions: 86
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -