Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31346
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    26   5.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   6.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   8.9  

>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 414 GQERVLIDDSRKIGKKEPMVLVLGHKFKLEVWETVVK 524
           G +  L   + + G KEP++  + H +K+ +WE  +K
Sbjct: 173 GDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLK 209


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 340 TSDNLFIFHYQ*NKYVYVFITMIRFLTLLP 251
           TS  L ++H+   +Y+ + I  +R L LLP
Sbjct: 299 TSRKLHLYHHNLEQYMRLDIAAVRSLNLLP 328


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 423 RVLIDDSRKIGKKEPMVLVLGHKFKLEVWETVVKMMAIGEVSSFVVKKEVMELLSYSCNT 602
           R L D   K  K+EP +++  HKF     +        G V S +++   MEL+   C  
Sbjct: 52  RKLHDIEHKFSKEEPSLILHIHKFHFRFEQQDGAFTYNGPVKS-ILQYIRMELIPPDCLE 110

Query: 603 IF 608
           +F
Sbjct: 111 VF 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,533
Number of Sequences: 5004
Number of extensions: 67667
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)