Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31346
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 58   6e-09
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            30   2.4  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
 Frame = +3

Query: 390 FHFQTWKLGQ-ERVLIDDSRKIGKKEPMVLVLGHKFKLEVWETVVKMMAIGEVSSFVVKK 566
           FHF+T+ + Q E+  +D SRKIG  +P  L++G KFKLE+WE ++K M + EV+ F   K
Sbjct: 97  FHFKTFLMEQSEKQELDCSRKIG--QPFELLMGKKFKLEIWEELIKTMRVKEVARFTCDK 154

Query: 567 EVM 575
            V+
Sbjct: 155 SVV 157


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 578 FHYLFFYHKTRDFSYGHHFNYSLPYFKFEFMT*YQHH 468
           +HY + YH   D+ Y +H++Y   ++ + +   YQ++
Sbjct: 316 YHYHYDYHYHYDYHYDYHYDYHY-HYDYHYHYDYQYY 351



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 578 FHYLFFYHKTRDFSYGHHFNYSLPY-FKFEFMT*YQHH 468
           +HY ++YH    + Y +H++Y   Y + + +   Y +H
Sbjct: 300 YHYDYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHYDYH 337


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/44 (20%), Positives = 23/44 (52%)
 Frame = -3

Query: 578 FHYLFFYHKTRDFSYGHHFNYSLPYFKFEFMT*YQHHRLLFTYF 447
           ++Y ++Y+    + Y HH+ Y   Y+ + +   Y ++   + Y+
Sbjct: 115 YYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYY 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,585,558
Number of Sequences: 59808
Number of extensions: 432714
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)