Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31346
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-9|AAA68778.1|  342|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    29   2.7  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    29   2.7  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    29   2.7  
AF125459-16|AAD12835.1|  578|Caenorhabditis elegans Hypothetical...    29   2.7  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    29   2.7  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      29   2.7  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    29   4.8  
U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U29488-9|AAA68778.1|  342|Caenorhabditis elegans Hypothetical
           protein C56C10.10 protein.
          Length = 342

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
 Frame = +3

Query: 432 IDDSRKI---GKKEPMVLVLGHKFKLEVWETVVKMMAIGEVSSFVVKKEVMELLSY 590
           IDD+RK    G  +P+ +V G KF+L V+E  +K M + E+S F V  E ++L+ Y
Sbjct: 57  IDDTRKPWPHGYGKPLEIVFGKKFQLPVFEQCLKTMLVDEISQFDV--ECIDLVQY 110


>Z82076-7|CAB04933.2|  291|Caenorhabditis elegans Hypothetical
           protein W07G1.1 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 260 GQKSYHCYKNVDIFILLIMKYKKVIRCPEYDCSLLIFFASIGLL 391
           G K  H Y+N D+F   I       R P  D  L +    IGL+
Sbjct: 29  GVKKIHVYRNADVFFQGIQMVVNTHRVPSVDVLLDVITERIGLI 72


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 583 YLIHATQFFLFFLERVG*TQSTWC*MITK 669
           +L  AT   +FF+ R G   STWC + TK
Sbjct: 726 FLAFATGVTMFFVNRKGHMLSTWCPLFTK 754


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 583 YLIHATQFFLFFLERVG*TQSTWC*MITK 669
           +L  AT   +FF+ R G   STWC + TK
Sbjct: 726 FLAFATGVTMFFVNRKGHMLSTWCPLFTK 754


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 583 YLIHATQFFLFFLERVG*TQSTWC*MITK 669
           +L  AT   +FF+ R G   STWC + TK
Sbjct: 761 FLAFATGVTMFFVNRKGHMLSTWCPLFTK 789


>AF125459-16|AAD12835.1|  578|Caenorhabditis elegans Hypothetical
           protein Y25C1A.1 protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 489 KFKLEVWETVVKMMAIGEVSSFVVKKEVMELLS 587
           K  LEV + V+K   I E+  F+  +EVMELL+
Sbjct: 269 KTNLEVCKKVLKSFYITEIEPFMPTQEVMELLT 301


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 583 YLIHATQFFLFFLERVG*TQSTWC*MITK 669
           +L  AT   +FF+ R G   STWC + TK
Sbjct: 726 FLAFATGVTMFFVNRKGHMLSTWCPLFTK 754


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 583 YLIHATQFFLFFLERVG*TQSTWC*MITK 669
           +L  AT   +FF+ R G   STWC + TK
Sbjct: 726 FLAFATGVTMFFVNRKGHMLSTWCPLFTK 754


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 269 ISDLASFSNGNIFLTCMYYFFNYRS*IAHFVTYIYKLI 156
           +++L SF NG +  T +   F   S +A  V YIY+L+
Sbjct: 333 VTNLVSFGNGVLSTTPVLQTFAIYSSVASVVCYIYQLV 370


>U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical
           protein T20B12.7 protein.
          Length = 238

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 534 IGEVSSFVVKKEVMELLSYSCNTIFFIFFREG 629
           +G+V   +++ +  ELL+  CNT+F +  + G
Sbjct: 51  VGDVERAIIQVQETELLAEVCNTVFDVMKQNG 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,329
Number of Sequences: 27780
Number of extensions: 365598
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)